SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene121634

Length: 226 nt

UniGene Fasta

>sp_v3.0_unigene121634
AATGTAGAACACAAGGCACTATATAAAGCTGTGTGTGTCCTTGTGGGGTGGAATCAAGATGTGCCACCTGATAATGCAAAGTCATATCAGTCGTTGGGTTTGATTGAAGCAAGAGCTAAACAAGAAGACCTTATTTATGGCCTCCATTAATTATTGTTCATAATACACGTGTTGGAAAGCGTAAAGATGGACTTTGGGAGGGATTGGGAATCAAGAGATGGACAAA

Ace file of the UniGene sp_v3.0_unigene121634

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	59%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G22430.1	" CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 p	3.0e-12	52%
RefSeq	Arabidopsis thaliana	NP_566707.2	uncharacterized protein [Arabidopsis thaliana]	5.0e-12	52%
RefSeq	Populus trichocarpa	XP_002311626.1	predicted protein, partial [Populus trichocarpa]	6.0e-11	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HDQ3

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 135 and 135, Distance to subject end: 121 aas, your sequence is shorter than subject: 75 - 582

Fln protein: NVEHKALYKAVCVLVGWNQDVPPDNAKSYQSLGLIEARAKQEDLxxWPPLIIVHNTRVGKRKDGLWEGLGIKRWT

Protein Length: 76

Fln nts: AATGTAGAACACAAGGCACTATATAAAGCTGTGTGTGTCCTTGTGGGGTGGAATCAAGATGTGCCACCTGATAATGCAAAGTCATATCAGTCGTTGGGTTTGATTGAAGCAAGAGCTAAACAAGAAGACCTTxxxxxxTGGCCTCCATTAATTATTGTTCATAATACACGTGTTGGAAAGCGTAAAGATGGACTTTGGGAGGGATTGGGAATCAAGAGATGGACAAA

Fln Alignment:

AllPine_a_c57648___VEHKALYKAVCVLVGWNQDVPPDNAKSYQSLGLIEARAKQEDLILWPPLIIVHNTRVGKRKDGLWEGLGIK
F6HDQ3________________VDHLGLHKALCVLLGWNYSMPPDNSKTYQFLSADEAAANQDDLIMWPPTVIIHNTVSGKGKDGRMEGLGNK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain