SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene121388

Length: 237 nt

UniGene Fasta

>sp_v3.0_unigene121388
AATGTATTATGTGAATTCGTGCCAGCCAACGCACAGGGCACTGTGGTGGGATTCTACAAGCAGACTTGCCCAAGTGCAGAGAAACTTGTGCAGCTGAGGGTACAGAGAAATTCAGCACAGATAAGACCATTGCGCCTGCTCTTCTTCGAATGCATTTTCACGACTGCTTCGTCAGAGGGTGTGATGCATCCCTGCTGATAGATTCCACTCCTGGAAACCAAGCAGAGAAAGAGGCAG

Ace file of the UniGene sp_v3.0_unigene121388

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Haem peroxidase, plant/fungal/bacterial [Medicago truncatula]	-	-	5.0e-11	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Peroxidase 27, putative	-	-	2.412e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	4.071e-17	-

Source	KEGGs	Term	e value	Identity
Sma3	Phenylalanine metabolism	00360	4.071e-17	%
Sma3	Methane metabolism	00680	4.071e-17	%
Sma3	Phenylpropanoid biosynthesis	00940	4.071e-17	%
Sma3	Biosynthesis of phenylpropanoids	01061	4.071e-17	%
Sma3	Metabolic pathways	01100	4.071e-17	%
Sma3	Biosynthesis of secondary metabolites	01110	4.071e-17	%

Source	Gene names
Sma3	At5g17820; At5g42180; GSVIVT00022535001; GSVIVT00022537001; GSVIVT00028183001; GSVIVT00037159001; MJC20.29; MVA3.170; MVA3.18; MtrDRAFT_AC157472g9v2; Os08g0113000; OsI_27578; OsJ_09210; OsJ_25802; P0498H04.27; P57; P64; PER57; PER64; PHYPADRAFT_110959; PH

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G26010.1	Peroxidase superfamily protein chr4:13200653-13201688 FORWARD LENGTH=310	9.0e-15	50%
RefSeq	Arabidopsis thaliana	NP_567738.1	peroxidase 44 [Arabidopsis thaliana]	1.0e-14	50%
RefSeq	Populus trichocarpa	XP_002319196.1	predicted protein, partial [Populus trichocarpa]	8.0e-18	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NLP5

Fln msg: Overlapping hits, possible frame ERROR between 153 and 36, Distance to subject end: 72 aas, your sequence is shorter than subject: 79 - 169

Fln protein: NVLCEFVPANAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFHDCFVRGCDASLLIDSTPGNQAEKEA

Protein Length: 80

Fln nts: AATGTATTATGTGAATTCGTGCCAGCCAACGCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTCACGACTGCTTCGTCAGAGGGTGTGATGCATCCCTGCTGATAGATTCCACTCCTGGAAACCAAGCAGAGAAAGAGGCAG

Fln Alignment:

AllPine_a_c57340___VLCEFVPANAQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFVRGCDASLLIDSTPGNQAEKEA
A9NLP5________________ILFELVPVNAQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFVRGCDASLLVDSTAGNQAEKEA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain