SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene121360

Length: 440 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene121360
TGTTGGCTATTTCATCGGCCTGTGTTAAGCTTCTGGCAGATTTTATCATATTGTTGTCTATGATATGGAGGCTACAAAGTCTTGTAATTGTGTAATTGTTTGTGATCATTGCTTTGGTGTTCAGATCACAGGCGTGGGCTACGTCTGATGATGAGGAGATTAAATCCTATATTGTTTACATGGATAAATCCATGAAGCCGGATCATTTCAGCCTCCACCAACACTGGTATACTTCAATGGTAGACCAGGTTTCAGGATCCAAATCGGATCCCGCTGCTATGTTATATATGTATGATGCCGTAATGCATGGCTTTTCTGTCAAGCTGACCAGCACGGGAGCTCAAGCTATGGAGAATATGGACGGATGCCTGGCTGTATTTCCGGATTCAGTCAAAGTAAACTCCATACTACTAGGACCCCGGATTTTATGGGTTTACATT

Ace file of the UniGene sp_v3.0_unigene121360 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Subtilisin-like protease n=2 Tax=Nicotiana tabacum RepID=A9XG40_TOBAC	-	-	6.0e-13	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQQ7

Fln msg: Distance to subject end: 647 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 115 - 772

Fln protein: LFVIIALVFRSQAWATSDDEEIKSYIVYMDKSMKPDHFSLHQHWYTSMVDQVSGSKSDPAAMLYMYDAVMHGFSVKLTSTGAQAMENMDGCLAVFPDSVKVNSILLGPRILWVYI

Protein Length: 116

Fln nts: TGTTGGCTATTTCATCGGCCTGTGTTAAGCTTCTGGCAGATTTTATCATATTGTTGTCTATGATATGGAGGCTACAAAGTCTTGTAATTGTGTAATTGTTTGTGATCATTGCTTTGGTGTTCAGATCACAGGCGTGGGCTACGTCTGATGATGAGGAGATTAAATCCTATATTGTTTACATGGATAAATCCATGAAGCCGGATCATTTCAGCCTCCACCAACACTGGTATACTTCAATGGTAGACCAGGTTTCAGGATCCAAATCGGATCCCGCTGCTATGTTATATATGTATGATGCCGTAATGCATGGCTTTTCTGTCAAGCTGACCAGCACGGGAGCTCAAGCTATGGAGAATATGGACGGATGCCTGGCTGTATTTCCGGATTCAGTCAAAGTAAACTCCATACTACTAGGACCCCGGATTTTATGGGTTTACATT

Fln Alignment:

AllPine_a_c57309___SQAWATSDDEEIKSYIVYMDKSMKPDHFSLHQHWYTSMVDQVSGSKSDPAAMLYMYDAVMHGFSVKLTSTGAQAMENMDGCLAVFPDSV
B8LQQ7________________SEALATSDDEEIKSYIVYMDKSMKPDHFSLHQHWYASMIDRVSGSKSDPAAMLYMYDTVMHGFSAKLTSTGAQAMENIDGCLAVFPDSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain