SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene121043

Length: 319 nt

UniGene Fasta

>sp_v3.0_unigene121043
ATTGATGATGCTGAAGATTGTGATGAACATCTTTCTTCAGATCAGAAAACCCTATCAGTTTCCAGAGCATCACATCTTTGGGAGTGTTTGCTAACTCATACAGACCAGCATGAGGAGTTAGCTTCTGGACCCATAGAGGACTTAATAGCACACCGTGAACATAGGTATCGTATTTCAGGATCAGCTTTACGTGCAGCCATTGACAATGGTTCCAATGCACTTCCAGCTGACTCAGCATCCTCTCTTACAGAAGATATAAACTATAGGCATAAGAATGTTGAAGAAATTTTACAGCATGCTGGACCTATGCAGGATGGCT

Ace file of the UniGene sp_v3.0_unigene121043

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	63%

Source	Gene names
Sma3	At5g40740; GSVIVT00003201001; GSVIVT00020576001; OJ1521_G01.18; Os02g0329300; OsI_07020; OsJ_06518; PHYPADRAFT_167806; VITISV_014082;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	sulfotransferase activity	GO:0008146	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sulfotransferase domain	IPR000863	-	-
Sma3	Small GTPase superfamily, SAR1-type	IPR006687	-	-
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G40740.1	" unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). chr5:16302229-16306371 REVERSE LENGTH=741"	2.0e-19	56%
RefSeq	Arabidopsis thaliana	NP_568585.1	uncharacterized protein [Arabidopsis thaliana]	3.0e-19	56%
RefSeq	Populus trichocarpa	XP_002300079.1	predicted protein [Populus trichocarpa]	5.0e-17	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8SKV6

Fln msg: Distance to subject end: 284 aas, your sequence is shorter than subject: 106 - 622

Fln protein: IDDAEDCDEHLSSDQKTLSVSRASHLWECLLTHTDQHEELASGPIEDLIAHREHRYRISGSALRAAIDNGSNALPADSASSLTEDINYRHKNVEEILQHAGPMQDG

Protein Length: 107

Fln nts: ATTGATGATGCTGAAGATTGTGATGAACATCTTTCTTCAGATCAGAAAACCCTATCAGTTTCCAGAGCATCACATCTTTGGGAGTGTTTGCTAACTCATACAGACCAGCATGAGGAGTTAGCTTCTGGACCCATAGAGGACTTAATAGCACACCGTGAACATAGGTATCGTATTTCAGGATCAGCTTTACGTGCAGCCATTGACAATGGTTCCAATGCACTTCCAGCTGACTCAGCATCCTCTCTTACAGAAGATATAAACTATAGGCATAAGAATGTTGAAGAAATTTTACAGCATGCTGGACCTATGCAGGATGGCT

Fln Alignment:

AllPine_a_c56935___SDQKTLSVSRASHLWECLLTHTDQHEELASGPIEDLIAHREHRYRISGSALRAAIDNGSNALPADSASS
D8SKV6________________ANQKVTSASRATTLWESLLKHTERHDKLASGPIEDLIAHRDHRYRIDGSALRVAIDRGMNVIPSSLNSN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain