SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene121028

Length: 328 nt

UniGene Fasta

>sp_v3.0_unigene121028
ATGGGATACACCAGAAGCGTGAATGGTTTTGCAGCTATTCTGGAAGAAGAACATGCTCTTTCCCTCTTAGAACTCCCTCAGGTACTATCCGTATTTCCTAACAGAGCAAGAAGTCTACACACAACTCGTTCATGGGGATTCCTTGGCTTAGAAGAAGGCGCTGGAGAATCTGAAAATGTACAAGTTTCTCCGCAATCGCTATGGAGAAATGGGCAATTCGGGAAGGATGTTATTATTGCTAACCTGGATACAGGGGTATGGCCGGAATCTGCAAGTTTTGATGACACGGATATAGGGCCTATTCCTTCTCGATGGAAGGGGTTCTGTC

Ace file of the UniGene sp_v3.0_unigene121028

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Subtilisin-like protease n=6 Tax=Arabidopsis RepID=Q9ZSP5_ARATH	-	-	8.0e-27	55%
FL-Next	tr=Subtilisin-like protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	45%
Sma3	Subtilisin-like protease	-	-	6.577e-25	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	4.773e-06	-
Sma3	Cucumisin.	EC:3.4.21.25	-	7.775e-08	-

Source	Gene names
Sma3	AIR3; At2g04160; At5g59810/mmn10_30; GSVIVT00011159001; GSVIVT00011831001; GSVIVT00011833001; GSVIVT00011835001; GSVIVT00012461001; GSVIVT00012462001; GSVIVT00012466001; GSVIVT00029050001; GSVIVT00033477001; OJ1136_A10.113; Os01g0794800; Os01g0795400; Os0

Source	GOs	Term	Type	Identity
Sma3	GMP synthase (glutamine-hydrolyzing) activity	GO:0003922	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	GMP biosynthetic process	GO:0006177	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	glutamine metabolic process	GO:0006541	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	lateral root morphogenesis	GO:0010102	Biological Process	-
Sma3	negative regulation of catalytic activity	GO:0043086	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Phosphofructokinase domain	IPR000023	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3		IPR000991	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	GMP synthase, C-terminal	IPR001674	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	GMP synthase, N-terminal	IPR004739	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3		IPR011702	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Chromogranin, conserved site	IPR018054	-	-
Sma3		IPR018318	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G04160.1	AIR3 Subtilisin-like serine endopeptidase family protein chr2:1401450-1407694 REVERSE LENGTH=772	4.0e-33	58%
RefSeq	Arabidopsis thaliana	NP_565309.2	Subtilisin-like serine endopeptidase family protein [Arabidopsis thaliana]	6.0e-33	58%
RefSeq	Populus trichocarpa	XP_002333640.1	predicted protein [Populus trichocarpa]	6.0e-32	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q40764

Fln msg: Distance to subject end: 611 aas, your sequence is shorter than subject: 109 - 779

Fln protein: MGYTRSVNGFAAILEEEHALSLLELPQVLSVFPNRARSLHTTRSWGFLGLEEGAGESENVQVSPQSLWRNGQFGKDVIIANLDTGVWPESASFDDTDIGPIPSRWKGFC

Protein Length: 110

Fln nts: ATGGGATACACCAGAAGCGTGAATGGTTTTGCAGCTATTCTGGAAGAAGAACATGCTCTTTCCCTCTTAGAACTCCCTCAGGTACTATCCGTATTTCCTAACAGAGCAAGAAGTCTACACACAACTCGTTCATGGGGATTCCTTGGCTTAGAAGAAGGCGCTGGAGAATCTGAAAATGTACAAGTTTCTCCGCAATCGCTATGGAGAAATGGGCAATTCGGGAAGGATGTTATTATTGCTAACCTGGATACAGGGGTATGGCCGGAATCTGCAAGTTTTGATGACACGGATATAGGGCCTATTCCTTCTCGATGGAAGGGGTTCTGTC

Fln Alignment:

AllPine_a_c56915___YTRSVNGFXXXXXXXXXXXXXXXPQVLSVFPNRARSLHTTRSWGFLGLEEGAGESENVQVSPQSLWRNGQFGKDVIIANLDTGVWPESASFDDTDIGPIPSRWKGFC
Q40764________________YTYAFNGFAAVLSKEQATTLVGKPGVLSVFPDTVLNLHTTHSWDYL--------EKDLSMPGFSYRKPKSSGTDIILGFLDTGIWPEAASFSDKGMGPVPSRWKGAC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain