SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene121009

Length: 258 nt

UniGene Fasta

>sp_v3.0_unigene121009
TTCGAGCATTTCAAATTTGACTAAATTAACTAGCCTCATTATATGTGATATACCTCGAGGTGGCTGGTCTCTTTCATTCCTACAGAATCTGAAGAATCTTACAACATTAGTCCTAAGAAACAATATGTTTTCTGGGCAAATTCCTGAGTACATTGGAGGGCTGAGAAAACTTGAGATGCTGGATTTGAGCTTTAACAATTTGACAGGACGAATTCCAGATTCCTTAAGAAACGTGAGCTCTTTGAAATACTTGACATT

Ace file of the UniGene sp_v3.0_unigene121009

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	-	-	1.0e-06	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Chromosome chr12 scaffold_57, whole genome shotgun sequence	-	-	1.195e-07	-

Source	Gene names
Sma3	AT1G53430; AT1G56130; F14G9.25; GSVIVT00031536001; GSVIVT00031541001; GSVIVT00031542001; GSVIVT00035223001; GSVIVT00035234001; GSVIVT00035539001; GSVIVT00035549001; GSVIVT00035559001; LRR-RLK; POPTRDRAFT_1066473; POPTRDRAFT_1074249; POPTRDRAFT_802804; POP

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G56120.1	Leucine-rich repeat transmembrane protein kinase chr1:20987288-20993072 REVERSE LENGTH=1047	7.0e-19	52%
RefSeq	Arabidopsis thaliana	NP_176008.4	Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]	9.0e-19	52%
RefSeq	Populus trichocarpa	XP_002310677.1	predicted protein [Populus trichocarpa]	6.0e-23	57%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS02

Fln msg: STOP codon was not found. Distance to subject end: 26 aas, your sequence is shorter than subject: 85 - 315

Fln protein: SSISNLTKLTSLIICDIPRGGWSLSFLQNLKNLTTLVLRNNMFSGQIPEYIGGLRKLEMLDLSFNNLTGRIPDSLRNVSSLKYLT

Protein Length: 86

Fln nts: TTCGAGCATTTCAAATTTGACTAAATTAACTAGCCTCATTATATGTGATATACCTCGAGGTGGCTGGTCTCTTTCATTCCTACAGAATCTGAAGAATCTTACAACATTAGTCCTAAGAAACAATATGTTTTCTGGGCAAATTCCTGAGTACATTGGAGGGCTGAGAAAACTTGAGATGCTGGATTTGAGCTTTAACAATTTGACAGGACGAATTCCAGATTCCTTAAGAAACGTGAGCTCTTTGAAATACTTGACATT

Fln Alignment:

AllPine_a_c56892___SISNLTKLTSLIICDIPRGGWSLSFLQNLKNLTTLVLRNNMFSGQIPEYIGGLRKLEML
A9NS02________________SISNLTNLNSLIIRDIPRGGTLLSFLQNLKNLTILVLSNNMISGEIPEYIGELNQLQML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain