SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene120910

Length: 533 nt

UniGene Fasta

>sp_v3.0_unigene120910
AACCATGTCGCTGGAAGGACGTGAAGGTTGGAAATATTGTAAAGATCAACCGTGATGAGTTTTTCCCTGCTGATCTCTTTTTTTATCCTCAAGTGATTCTGATGGAATATGCTACGTTGAGACCATGAACTTAGATGGGGAGACAAATCTAAAACTGAGGAAATGTCTTGATGAAACCAAGAACTTCACCAGCAGTTCCATGTTTCAAGAATTTAATGCTATTGTTGAGTGTGAGCTACCAAATCCCTCTATTTATACTTTTGTGGGAAAACTCTTATGGCAAACTATGATACTAAATCTCAGTCCTATGCAAGTCCTTTTACGTGGCTCAAAGTTGAAGAATACTTCCTTTGTATATGGAGCAGTCTTGTTTACTGGGCATGAAACTAAGGTCATGATGAACTCAACTGACCCACCCTCAAAACGCAGTAGGATGGAGAAGCGCTTAGATAAACTGGTTATATTCCAAGCTATTACTCTTATTATACTGTCACTTGTTAGCAGTTGTGCATTTTCTATCTTGCTGTCCAAGG

Ace file of the UniGene sp_v3.0_unigene120910

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative Potential phospholipid-transporting ATPase 8 [Oryza sativa Japonica Group] gb\|EAZ37061.1\| hypothetical protein OsJ_21404 [Oryza sativa Japonica Group]	-	-	2.8026e-45	48%
FL-Next	sp=Putative phospholipid-transporting ATPase 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%
Sma3	Aminophospholipid ATPase	-	-	1.551e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipid-translocating ATPase.	EC:3.6.3.1	-	0.0	-

Source	Gene names
Sma3	ALA10; ALA11; ALA12; ALA2; ALA3; ALA4; ALA5; ALA6; ALA7; ALA8; ALA9; At1g13210; At1g17500; At1g26130; At1g54280; At1g59820; At1g68710; At1g72700; At3g13900; At3g25610; At3g27870; CHLREDRAFT_190292; F14G11.10; F1L3.21; F20D21.10; F23H11.14; F24J5.6; F28B23

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	phospholipid-translocating ATPase activity	GO:0004012	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	phospholipid transport	GO:0015914	Biological Process	-
Sma3	Golgi vesicle budding	GO:0048194	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	PIK-related kinase, FAT	IPR003151	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, phospholipid-translocating, flippase	IPR006539	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	HAD superfamily hydrolase-like, type 3	IPR013200	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G13900.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein chr3:4586151-4590681 FORWARD LENGTH=1243	51%
RefSeq	Arabidopsis thaliana	NP_188006.4	phospholipid-translocating ATPase [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002297933.1	aminophospholipid ATPase [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LVK9

Fln msg: Distance to subject end: 913 aas, your sequence is shorter than subject: 177 - 1243

Fln protein: TMSLEGREGWKYCKDQP**VFPC*SLFLSSSDSDGICYVETMNLDGETNLKLRKCLDETKNFTSSSMFQEFNAIVECELPNPSIYTFVGKLLWQTMILNLSPMQVLLRGSKLKNTSFVYGAVLFTGHETKVMMNSTDPPSKRSRMEKRLDKLVIFQAITLIILSLVSSCAFSILLSK

Protein Length: 178

Fln nts: AACCATGTCGCTGGAAGGACGTGAAGGTTGGAAATATTGTAAAGATCAACCGTGATGAGTTTTTCCCTGCTGATCTCTTTTTTTATCCTCAAGTGATTCTGATGGAATATGCTACGTTGAGACCATGAACTTAGATGGGGAGACAAATCTAAAACTGAGGAAATGTCTTGATGAAACCAAGAACTTCACCAGCAGTTCCATGTTTCAAGAATTTAATGCTATTGTTGAGTGTGAGCTACCAAATCCCTCTATTTATACTTTTGTGGGAAAACTCTTATGGCAAACTATGATACTAAATCTCAGTCCTATGCAAGTCCTTTTACGTGGCTCAAAGTTGAAGAATACTTCCTTTGTATATGGAGCAGTCTTGTTTACTGGGCATGAAACTAAGGTCATGATGAACTCAACTGACCCACCCTCAAAACGCAGTAGGATGGAGAAGCGCTTAGATAAACTGGTTATATTCCAAGCTATTACTCTTATTATACTGTCACTTGTTAGCAGTTGTGCATTTTCTATCTTGCTGTCCAAGG

Fln Alignment:

AllPine_a_c56779___GREGWKYC---------KDQP**VFPCXXXXXXXXXXXGICYVETMNLDGETNLKLRKCLDETKNFTSSSMFQEFNAIVECELPNPSIYTFVGKLLWQTMILNLSPMQVLLRGSKLKNTSFVYGAVLFTGHETKVMMNSTDPPSKRSRMEKRLDKLVIFQAITLIILSLVSSCAFSIL
Q9LVK9________________GRRKWKKLRVGDVVKVEKDQ---FFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRCLDVTLPLERDDTFQSFSGTIKCEDPNPNLYTFVGNLEYDGQVYPLDPSQILLRDSKLRNTSYVYGVVVFTGHDTKVMQNSTKSPSKRSRIEKRMDYIIYTLFALLVLVSFISSLGFAVM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain