SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene120862

Length: 576 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene120862
TTGGAATTGCCATCTATCAGAAACCTACTTCAAGTTCGTGTTATATGCAGAGGAAACAACAAGATCCTCCTTTATGCCAGGAGGATGATAGATCCGATGCTGCCTGGTATACACCACTGCAAAGATGCATTCATCAGATACCTAGTGAAAGTTCTGTTCATGGTTCTATGTGGCCATCACATTGGTCATTACGACTTGAAGAGGAACCATTATGGCTGAAGTATAAACTAGGAAGCACAAATGGTTCAAGTAGAGGCTTCCACAAAGACACAGCATACTGGAGGGATGTTGTACAAAATTTGTACTGGCATGATTTAAGTATTGATTGGTCAATCATCCGAAATGTGATGGATATGAGAGCAGGTTTTGGAGGGTTTGCCGCAGCTCTTATTGAGCAACCAGTTTGGGTAATGAATGTCATTCCAATTGATGGGCCAGACACACTACCCTTGATATTTGATAGAGGCCTGTTTGGGGTTTATCATGATTGGTGTGAATCGTTCAACACTTATCCGCGAACATACGATCTCCTCCATGCAGACCATCTCTTCGGTGATTTAGCATCAAGGTGTTAAG

Ace file of the UniGene sp_v3.0_unigene120862 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9S2Q5_RICCO	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	Ankyrin-like protein	-	-	6.791e-16	-

Source	Gene names
Sma3	AT4g14360; At1g04430; At1g19430; At1g29470; At1g77260; At2g34300; At2g39750; At2g40280; At3g23300; At3g51070; At4g00740; At4g00740/F15P23.2; At4g14360; At5g04060; At5g06050; At5g64030; B1065E10.47; B1088C09.16; F15D2.5; F15P23.2; F18O21_40; F24M12.110; F8

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Flavodoxin	IPR001094	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Domain of unknown function DUF21	IPR002550	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3	tRNA wybutosine-synthesis	IPR013917	-	-
Sma3		IPR017909	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G34300.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein chr2:14473916-14476811 REVERSE LENGTH=770	56%
RefSeq	Arabidopsis thaliana	NP_180977.1	putative methyltransferase PMT25 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002307464.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXM2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 77 aas, your sequence is shorter than subject: 191 - 601

Fln protein: GIAIYQKPTSSSCYMQRKQQDPPLCQEDDRSDAAWYTPLQRCIHQIPSESSVHGSMWPSHWSLRLEEEPLWLKYKLGSTNGSSRGFHKDTAYWRDVVQNLYWHDLSIDWSIIRNVMDMRAGFGGFAAALIEQPVWVMNVIPIDGPDTLPLIFDRGLFGVYHDWCESFNTYPRTYDLLHADHLFGDLASRC*

Protein Length: 192

Fln nts: TTGGAATTGCCATCTATCAGAAACCTACTTCAAGTTCGTGTTATATGCAGAGGAAACAACAAGATCCTCCTTTATGCCAGGAGGATGATAGATCCGATGCTGCCTGGTATACACCACTGCAAAGATGCATTCATCAGATACCTAGTGAAAGTTCTGTTCATGGTTCTATGTGGCCATCACATTGGTCATTACGACTTGAAGAGGAACCATTATGGCTGAAGTATAAACTAGGAAGCACAAATGGTTCAAGTAGAGGCTTCCACAAAGACACAGCATACTGGAGGGATGTTGTACAAAATTTGTACTGGCATGATTTAAGTATTGATTGGTCAATCATCCGAAATGTGATGGATATGAGAGCAGGTTTTGGAGGGTTTGCCGCAGCTCTTATTGAGCAACCAGTTTGGGTAATGAATGTCATTCCAATTGATGGGCCAGACACACTACCCTTGATATTTGATAGAGGCCTGTTTGGGGTTTATCATGATTGGTGTGAATCGTTCAACACTTATCCGCGAACATACGATCTCCTCCATGCAGACCATCTCTTCGGTGATTTAGCATCAAGGTGTTAAG

Fln Alignment:

AllPine_a_c56726___AIYQKPTSSSCYMQRKQQDPPLCQEDDRSDAAWYTPLQRCIHQIPSESSVHGSM-----WPSHWSLRLEEEPLW---LKYKLGSTNGSSRGFHKDTAYWRDVVQNLYWHDLSIDWSIIRNVMDMRAGFGGFAAALIEQPVWVMNVIPIDGPDTLPLIFDRGLFGVYHDWCESFNTYPRTYDLLHA
A9NXM2________________AIWKKPSNNSCFSLKSVPGPYLCDEHDDPNVGWYVPLKACISRFPSLKERENNLIELPKWPS----RLNDPPQRATDIKNFLDIFKADTRRWQRRVTYYKNVL------NLKLGSSSVRNLMDMNAGFGGFAAAVIADPVWIMNVVPAYTSNTLGVIYDRGLIGVYHDWCEAFSTYPRTYDFIHA

SNPs (tot: 3)

Position	C %	G %	T %	Probability
432	25		75	0.996473
433	25		75	0.996473
443		33	66	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain