SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene120708

Length: 483 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene120708
AATGTATAGAGGACGCACGAAAGGTTTTTGACAAGATGACTACACGAAATGTGGTGTCATGGACTGCAATGATTGTTGGATATGCCATGCACGGGTTTGGCACTCAGGCCCTCCAAGCGTTTGAACAGATGCAAAACTCTGGCATAAAGCCAAATAATGTCACATTAATCGGTGTTCTCTCTGCGTGCTGCCATGCAGGCCTAGTGAATGATGGTTGGCAATATTTTAATGGCATGAGTGAAGTTTATAACATCACTCCTACAGTGGAGCACTATTGTTGCATGGTTGACATTCTTGGCCGTGCAGGGCACCTGGATGCAGCACAGAACTTTATCACTAAAATGCCTATGCAGCCTGATGCTGCTGTGTGGAGGACTTTGCTTGGTGCTTGTAGACTCCATGCTGATATTACGCTAGCAGAACATGTGGTACAATACCTTATTGAGTTGGACTCAAAAAATGCTGCCCATTATGTGTTACTGT

Ace file of the UniGene sp_v3.0_unigene120708 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9LW32.1\|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g26782, mitochondrial; Flags: Precursor dbj\|BAB01225.1\| selenium-binding protein-like [Arabidopsis thal	-	-	1.96182e-44	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Putative pentatricopeptide (PPR) repeat-containing protein	-	-	5.991e-09	-

Source	Gene names
Sma3	At2g01510; At2g03880; At2g13600; At2g36730; At3g12770; At3g23330; At3g26782; At3g47530; At3g49170; At3g49710; At4g02750; At4g13650; At4g18750; At4g21065; At4g30700; At5g16860; B1032F05.19; B1358B12.23; DYW9; EMB2261; F13K3.13; F18A5.40; F1P2.80; F28A21.16

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	diacylglycerol kinase activity	GO:0004143	Molecular Function	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	deaminase activity	GO:0019239	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G26782.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:9850594-9852682 FORWARD LENGTH=659	51%
RefSeq	Arabidopsis thaliana	NP_001078212.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002302824.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: STOP codon was not found. Distance to subject end: 7 aas, your sequence is shorter than subject: 160 - 232

Fln protein: CIEDARKVFDKMTTRNVVSWTAMIVGYAMHGFGTQALQAFEQMQNSGIKPNNVTLIGVLSACCHAGLVNDGWQYFNGMSEVYNITPTVEHYCCMVDILGRAGHLDAAQNFITKMPMQPDAAVWRTLLGACRLHADITLAEHVVQYLIELDSKNAAHYVLL

Protein Length: 161

Fln nts: AATGTATAGAGGACGCACGAAAGGTTTTTGACAAGATGACTACACGAAATGTGGTGTCATGGACTGCAATGATTGTTGGATATGCCATGCACGGGTTTGGCACTCAGGCCCTCCAAGCGTTTGAACAGATGCAAAACTCTGGCATAAAGCCAAATAATGTCACATTAATCGGTGTTCTCTCTGCGTGCTGCCATGCAGGCCTAGTGAATGATGGTTGGCAATATTTTAATGGCATGAGTGAAGTTTATAACATCACTCCTACAGTGGAGCACTATTGTTGCATGGTTGACATTCTTGGCCGTGCAGGGCACCTGGATGCAGCACAGAACTTTATCACTAAAATGCCTATGCAGCCTGATGCTGCTGTGTGGAGGACTTTGCTTGGTGCTTGTAGACTCCATGCTGATATTACGCTAGCAGAACATGTGGTACAATACCTTATTGAGTTGGACTCAAAAAATGCTGCCCATTATGTGTTACTGT

Fln Alignment:

AllPine_a_c56544___IEDARKVFDKMTTRNVVSWTAMIVGYAMHGFGTQALQAFEQMQNSGIKPNNVTLIGVLSACCHAGLVNDGWQYFNGMSEVYNITPTVEHYCCMVDILGRAGHLDAAQNFITKMPMQPDAAVWRTLLGACRLHADITLAEHVVQYL
D5AB53________________IGDASKVFDGMSTRNVVSWNAMIAAYAIHGCGKQALDLFEQMKHSDTSPNQVTFVGVLSACCHAGLVSEGRQYFNSMSVDYHITPVMEHYCCMVDLLGRTGCLDEAHDFINKMPIEPDTAVWQSLLGACRTHANVDLGEKVAERL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain