SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene120675

Length: 254 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene120675
AGTTAAATTGCCAATATTTACTGTACATTTATGGCTGCCTAAAGCCCATGTAGAGCTCCCATTGCAGGATCCATGATCCTTGCAGCAATTCTTCTAAAATTAGGAGGTTATGGCATTTTACGGATACTAAGTTTATTTCATCACACAACTAAATCAACTTCTAGACTTCTATCAAGCATTGCTCTAGTCGGAGCTGTTTCAACAAGTTTAATTTGTCTTCGTCAAACTGATCTAAAATGTCTTATTGCTTATTC

Ace file of the UniGene sp_v3.0_unigene120675 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADH-ubiquinone oxidoreductase chain 4 n=4 Tax=Lumbricus terrestris RepID=NU4M_LUMTE	-	-	2.0e-30	87%
FL-Next	sp=NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; Taiwania cryptomerioides. Plastid; Chloroplast.	-	-	0.0	61%

Source	Gene names
Sma3	nad4;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	ATP synthesis coupled electron transport	GO:0042773	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NADH:ubiquinone/plastoquinone oxidoreductase	IPR001750	-	-
Sma3	NADH:ubiquinone oxidoreductase	IPR003918	-	-
Sma3	NADH-quinone oxidoreductase, chain M/4	IPR010227	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: G4LAU4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 195 aas, your sequence is shorter than subject: 25 - 501

Fln protein: VKLPIFTVHLWLPKAHVELPLQDP*

Protein Length: 26

Fln nts: AGTTAAATTGCCAATATTTACTGTACATTTATGGCTGCCTAAAGCCCATGTAGAGCTCCCATTGCAGGATCCATGATCCTTGCAGCAATTCTTCTAAAATTAGGAGGTTATGGCATTTTACGGATACTAAGTTTATTTCATCACACAACTAAATCAACTTCTAGACTTCTATCAAGCATTGCTCTAGTCGGAGCTGTTTCAACAAGTTTAATTTGTCTTCGTCAAACTGATCTAAAATGTCTTATTGCTTATTC

Fln Alignment:

AllPine_a_c56504___VKLPIFTVHLWLPKAHVE
G4LAU4________________IKLPIFPLHTWLPDTHGE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain