SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene120639

Length: 253 nt

UniGene Fasta

>sp_v3.0_unigene120639
CATCCCATAATAGGTGAAGTACAGAAATGTGAAGTAGTTCAGCTATTATGGGATGATGACGGTCTCCATTACTTCAAACCAACAAGTTGCCTCAATAGTAGCTTCAGCTTTCTACTGCCTTTTCAATCTGTTTTCAGGGTTCTTCATTCCTAAACCGCGAATCCCAAAGTGGTGGATATGGTATTATTGGATATGCCCGCTTTCCTGGACCATCTATGGCCTCATTGCCTCGCAATATGGGGACGTTACATCC

Ace file of the UniGene sp_v3.0_unigene120639

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter G family member 36 n=5 Tax=Brassicaceae RepID=AB36G_ARATH	-	-	3.0e-31	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	ATP-binding cassette transporter, putative	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	2.82222e-42	-
Sma3	Heme-transporting ATPase.	EC:3.6.3.41	-	3.155e-11	-

Source	Gene names
Sma3	ABC1; At1g15210; At1g15520; At1g59870; At1g66950; At2g26910; At2g29940; At2g36380; At3g16340; At3g53480; B1090H08.39; F12C20.5; F1O11.1; F1O19.3; F23F1.14; F23H11.19; F4P12.180; F9L1.15; GSVIVT00012684001; GSVIVT00016814001; GSVIVT00016819001; GSVIVT00019

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cadmium ion transmembrane transporter activity	GO:0015086	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	cadmium ion transport	GO:0015691	Biological Process	-
Sma3	lead ion transport	GO:0015692	Biological Process	-
Sma3	negative regulation of defense response	GO:0031348	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G59870.1	PEN3, PDR8, ATPDR8, ABCG36, ATABCG36 ABC-2 and Plant PDR ABC-type transporter family protein chr1:22034661-22039844 FORWARD LENGTH=1469	2.0e-38	75%
RefSeq	Arabidopsis thaliana	NP_176196.1	ABC transporter G family member 36 [Arabidopsis thaliana]	3.0e-38	75%
RefSeq	Populus trichocarpa	XP_002298240.1	ABC transporter family, pleiotropic drug resistance protein [Populus trichocarpa]	3.0e-37	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW55

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 57 aas, your sequence is shorter than subject: 84 - 471

Fln protein: IP**VKYRNVK*FSYYGMMTVSITSNQQVASIVASAFYCLFNLFSGFFIPKPRIPKWWIWYYWICPLSWTIYGLIASQYGDVTS

Protein Length: 85

Fln nts: CATCCCATAATAGGTGAAGTACAGAAATGTGAAGTAGTTCAGCTATTATGGGATGATGACGGTCTCCATTACTTCAAACCAACAAGTTGCCTCAATAGTAGCTTCAGCTTTCTACTGCCTTTTCAATCTGTTTTCAGGGTTCTTCATTCCTAAACCGCGAATCCCAAAGTGGTGGATATGGTATTATTGGATATGCCCGCTTTCCTGGACCATCTATGGCCTCATTGCCTCGCAATATGGGGACGTTACATCC

Fln Alignment:

AllPine_a_c56455___FSYYGMMTVSITSNQQVASIVASAFYCLFNLFSGFFIPKPRIPKWWIWYYWICPLSWTIYGLIASQYGDV
A9NW55________________FTYYGMLTVAISPNAQVAAVISSAFYSIFNLFSGFLITRPQLPRWWVWYYWICPLAWTLNGLVTSQYGDM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain