SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene120604

Length: 349 nt

UniGene Fasta

>sp_v3.0_unigene120604
CGTCGTGACCTTGGCTGTCACTCATCCACATGATCAGAACAGAGAAATTCTTTTCATTCAACGAAATGCATCATGGCCAGTAATATGTGTGACTGCTGTCATCTGTGCAATAGGTATAACATTTCCATATACAGTGATTGGCAAAACAATGGCTATGGACTCCCTGCCATTCTCCTACTTTGGCTACTTGGTTGTAATTATATTGGGCTATATTTTTATAGGCCAACTGGTCAAGATGGCCTACATTTATGTTTATAAGAGATGGCTGTAGTGATTCTATTTGTTTTAAGGGAGAAACAGCTCCCTTGATGTCGTCTTATAACAAACCGGAATGTTCCCTACATGTACA

Ace file of the UniGene sp_v3.0_unigene120604

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Endoplasmic reticulum [ER]-type calcium ATPase n=1 Tax=Populus trichocarpa RepID=B9H6P8_POPTR	-	-	2.0e-19	55%
FL-Next	tr=Endoplasmic reticulum [ER]-type calcium ATPase; subsp. trichocarpa).	-	-	0.0	55%

Source	Gene names
Sma3	GSVIVT00011448001; POPTRDRAFT_818433; VITISV_016764;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	magnesium-importing ATPase activity	GO:0015444	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	magnesium ion transport	GO:0015693	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type, magnesium-translocating	IPR006415	-	-
Sma3	Protein of unknown function DUF617, plant	IPR006460	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002306511.1	endoplasmic reticulum [ER]-type calcium ATPase [Populus trichocarpa]	3.0e-24	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9H6P8

Fln msg: your sequence is shorter than subject: 90 - 971

Fln protein: VVTLAVTHPHDQNREILFIQRNASWPVICVTAVICAIGITFPYTVIGKTMAMDSLPFSYFGYLVVIILGYIFIGQLVKMAYIYVYKRWL*

Protein Length: 91

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCACATGATCAGAACAGAGAAATTCTTTTCATTCAACGAAATGCATCATGGCCAGTAATATGTGTGACTGCTGTCATCTGTGCAATAGGTATAACATTTCCATATACAGTGATTGGCAAAACAATGGCTATGGACTCCCTGCCATTCTCCTACTTTGGCTACTTGGTTGTAATTATATTGGGCTATATTTTTATAGGCCAACTGGTCAAGATGGCCTACATTTATGTTTATAAGAGATGGCTGTAG___TGATTCTATTTGTTTTAAGGGAGAAACAGCTCCCTTGATGTCGTCTTATAACAAACCGGAATGTTCCCTACATGTACA

Fln Alignment:

AllPine_a_c56409___QNREILFIQRNASWPVICVTAVICAIGITFPYTVIGKTMAMDSLPFSYFGYLVVIILGYIFIGQLVKMAYIYVYKRWL
B9H6P8________________RTEKIPFIQEISSWPVICSTVVISAIGIAIPFTQVGEVMGFTNLPFSYFGFLVVLFLGYFTVGQVVKRMYILIYRKWL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain