SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene120481

Length: 257 nt

UniGene Fasta

>sp_v3.0_unigene120481
CCACATTCCATCAGAGATAGGTTGCCTGACAGGATTAGTGACTCTGAACCTCTCCAGGAACAATCTTAGTGGCTCCATTCCTGAGACATTAGGAAGCATTAGACAGCTGGAGTCCCTGGATCTTTCCTTGAACCGAATCTCTGGAGAAATACCAACACAGCTTGTGACTATAGATTTCCTTCAGGTTTTGAATTTAAGCAATAACAGACTCTCTGGAATGATTCCACTGGGCAGACACTTTGATACCTTTGGTGCAA

Ace file of the UniGene sp_v3.0_unigene120481

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	receptor-like protein 9DC [Solanum pimpinellifolium] gb\|AAT77548.1\| 9DC1 [Solanum pimpinellifolium] gb\|AAT77549.1\| 9DC2 [Solanum pimpinellifolium]	-	-	3.0e-20	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	Chromosome chr8 scaffold_115, whole genome shotgun sequence	-	-	5.927e-21	-

Source	Gene names
Sma3	9DC1; 9DC2; 9DC3; At1g74190; At3g53240; B1085F01.31; CM0545.410.nc; Cf-4; Cf-4A; Cf-5; Cf-9; F1O17.14; F9E11.4; GSVIVT00000950001; GSVIVT00001326001; GSVIVT00001330001; GSVIVT00001332001; GSVIVT00001335001; GSVIVT00001338001; GSVIVT00001339001; GSVIVT0000

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	cation transport	GO:0006812	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G53240.1	AtRLP45, RLP45 receptor like protein 45 chr3:19735927-19739047 FORWARD LENGTH=891	1.0e-22	53%
RefSeq	Arabidopsis thaliana	NP_190892.3	receptor like protein 45 [Arabidopsis thaliana]	1.0e-22	53%
RefSeq	Populus trichocarpa	XP_002298417.1	predicted protein, partial [Populus trichocarpa]	2.0e-23	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 80 aas, your sequence is shorter than subject: 85 - 818

Fln protein: HIPSEIGCLTGLVTLNLSRNNLSGSIPETLGSIRQLESLDLSLNRISGEIPTQLVTIDFLQVLNLSNNRLSGMIPLGRHFDTFGA

Protein Length: 86

Fln nts: CCACATTCCATCAGAGATAGGTTGCCTGACAGGATTAGTGACTCTGAACCTCTCCAGGAACAATCTTAGTGGCTCCATTCCTGAGACATTAGGAAGCATTAGACAGCTGGAGTCCCTGGATCTTTCCTTGAACCGAATCTCTGGAGAAATACCAACACAGCTTGTGACTATAGATTTCCTTCAGGTTTTGAATTTAAGCAATAACAGACTCTCTGGAATGATTCCACTGGGCAGACACTTTGATACCTTTGGTGCAA

Fln Alignment:

AllPine_a_c56254___HIPSEIGCLTGLVTLNLSRNNLSGSIPETLGSIRQLESLDLSLNRISGEIPTQLVTIDFLQVLNLSNNRLSGMIP
B8LQX6________________HIPSSLCNCTELRYIAFSHNNLVGRIPAELGLLQNLQKLYLHTNKLESTIPPSLGNCSSLENLFLGDNRLSGNIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain