SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene120454

Length: 250 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene120454
GAAATGCCTAGAGAATCCCGGATTGTAAAATTCTTCAAAGGGCCCAAAAGAGGAGACGATTTTACAATTCCTCAAGCGCTTGTAAGTATTGATATGCTAATCCTGTTTGTAACCACAGTTTGTGGGGTTGGAACAACTCTGACAGCCATTGATAATATGGGCCAGATGGGCAAATCTCTTGGGTACACTCACCAGAATATAAGTACCTTTGTTGGGCTTATTAGCATATGGAATTTTCTTGGGCGTGTTG

Ace file of the UniGene sp_v3.0_unigene120454 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Nodulin family protein, putative, expressed	-	-	1.026e-16	-

Source	Gene names
Sma3	AT.I.24-7; At2g28120; At2g28120/F24D13.9; At2g39210; At3g01930; F1C9.29; F28J7.26; GSVIVT00000612001; GSVIVT00012484001; GSVIVT00012949001; GSVIVT00017962001; GSVIVT00018121001; GSVIVT00018122001; GSVIVT00018123001; GSVIVT00018125001; GSVIVT00018126001; G

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G39210.1	Major facilitator superfamily protein chr2:16366287-16368231 REVERSE LENGTH=601	9.0e-21	68%
RefSeq	Arabidopsis thaliana	NP_181454.1	major facilitator protein [Arabidopsis thaliana]	1.0e-20	68%
RefSeq	Populus trichocarpa	XP_002326206.1	predicted protein, partial [Populus trichocarpa]	1.0e-20	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: Distance to subject end: 189 aas, your sequence is shorter than subject: 83 - 626

Fln protein: EMPRESRIVKFFKGPKRGDDFTIPQALVSIDMLILFVTTVCGVGTTLTAIDNMGQMGKSLGYTHQNISTFVGLISIWNFLGRV

Protein Length: 84

Fln nts: GAAATGCCTAGAGAATCCCGGATTGTAAAATTCTTCAAAGGGCCCAAAAGAGGAGACGATTTTACAATTCCTCAAGCGCTTGTAAGTATTGATATGCTAATCCTGTTTGTAACCACAGTTTGTGGGGTTGGAACAACTCTGACAGCCATTGATAATATGGGCCAGATGGGCAAATCTCTTGGGTACACTCACCAGAATATAAGTACCTTTGTTGGGCTTATTAGCATATGGAATTTTCTTGGGCGTGTTG

Fln Alignment:

AllPine_a_c56218___PKRGDDFTIPQALVSIDMLILFXXXXXXXXXXXTAIDNMGQMGKSLGYTHQNISTFVGLISIWNFLGRV
B8LRH5________________PRIGEDHTIFQAIQKFDFWLLFFAFLCGVGTGMAVINNMGQIGLAMGFV--DVSMFVSLISIWGFFGRI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain