SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene120442

Length: 289 nt

UniGene Fasta

>sp_v3.0_unigene120442
CTTTTAGAGGACGTGGAACAATTCCACTTACTACTTATCTTGAAGTTTACAAAAGAGGAGATCTTGTAGATGTTGTATGTAATGGTGCAGTACAAAAAGGAATGCCTCATAAATTCTACCACGGAAAAACAGGAAGAGTTTTTGATGTTAATAAAAGATCAGTTGGAGTTGTTATCAATAAAGTTGTTGGAAATCGTATGATCCCAAAAAGAATTTATATTCGTATTGAACATATTAGACATTCAAACTCAAGACTTGATTTTCTTAAACGTGTTAAAGATAATGAATC

Ace file of the UniGene sp_v3.0_unigene120442

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L21 n=1 Tax=Lepidochitona cinerea RepID=E3P7F3_9MOLL	-	-	6.0e-33	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	60S ribosomal protein L21	-	-	2.703e-10	-

Source	Gene names
Sma3	At1g09590; At1g09690; At1g57660; At1g57860; CHLREDRAFT_24354; F14J9.25; F21M12.8; GSVIVT00025419001; GSVIVT00025430001; LOC_Os03g04750; LOC_Os10g32820; MICPUN_95995; OSJNBa0006L06.3; OSTLU_27810; Os03g0141000; Os10g0465800; OsI_09955; OsJ_09354; OsJ_31823

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L21e	IPR001147	-	0.0	-
Sma3	Ribosomal protein L21e, conserved site	IPR018259	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G57860.1	Translation protein SH3-like family protein chr1:21430034-21430827 REVERSE LENGTH=164	1.0e-35	56%
RefSeq	Arabidopsis thaliana	NP_564726.1	60S ribosomal protein L21-2 [Arabidopsis thaliana]	2.0e-35	56%
RefSeq	Populus trichocarpa	XP_002304624.1	predicted protein [Populus trichocarpa]	2.0e-38	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NLM4

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 95 - 165

Fln protein: FRGRGTIPLTTYLEVYKRGDLVDVVCNGAVQKGMPHKFYHGKTGRVFDVNKRSVGVVINKVVGNRMIPKRIYIRIEHIRHSNSRLDFLKRVKDNE

Protein Length: 96

Fln nts: CTTTTAGAGGACGTGGAACAATTCCACTTACTACTTATCTTGAAGTTTACAAAAGAGGAGATCTTGTAGATGTTGTATGTAATGGTGCAGTACAAAAAGGAATGCCTCATAAATTCTACCACGGAAAAACAGGAAGAGTTTTTGATGTTAATAAAAGATCAGTTGGAGTTGTTATCAATAAAGTTGTTGGAAATCGTATGATCCCAAAAAGAATTTATATTCGTATTGAACATATTAGACATTCAAACTCAAGACTTGATTTTCTTAAACGTGTTAAAGATAATGAATC

Fln Alignment:

AllPine_a_c56202___FRGRGTIPLTTYLEVYKRGDLVDVVCNGAVQKGMPHKFYHGKTGRVFDVNKRSVGVVINKVVGNRMIPKRIYIRIEHIRHSNSRLDFLKRVKDNE
A9NLM4________________FRKKGYAPLSTYLRSYKIGQYVDIKVNGSIHKGMPHKFYHGRTGVVWNVTKRAIGVEMNKQVRNKIIKKRIHVRIEHVQPSRCAEDAILRRKNND

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain