SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene120210

Length: 233 nt

UniGene Fasta

>sp_v3.0_unigene120210
GCTACTGCCGACACAGGGGCGAGTACATGCTCGTTTATGAATACATGTCCGGAGGCGACCTTGAGTGTCTCCTGTACAGACAGCAGAATCCCGTGCTGCCATGGGAGCGGCGGCTAGGAATCGCGCTAGACTGCGCGGAGGGGCTGGCATACCTCCGCCTCTTTCCTGGTGGCGCGGTCGTACACCGCGACATCAAGCCCACCAACATACTTCTCAACGAGTCCGGGCAGGCG

Ace file of the UniGene sp_v3.0_unigene120210

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase CRINKLY4-like protein n=1 Tax=Oryza sativa Japonica Group RepID=Q8H2M1_ORYSJ	-	-	3.0e-15	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%

Source	Gene names
Sma3	OSJNBa0066H10.132; OsI_25418; OsJ_23594; POPTRDRAFT_241631; POPTRDRAFT_296334;

Source	GOs	Term	Type	Identity
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3		IPR001899	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G70130.1	Concanavalin A-like lectin protein kinase family protein chr1:26409743-26411801 REVERSE LENGTH=656	8.0e-18	48%
RefSeq	Arabidopsis thaliana	NP_177170.1	concanavalin A-like lectin protein kinase [Arabidopsis thaliana]	1.0e-17	48%
RefSeq	Populus trichocarpa	XP_002319677.1	predicted protein, partial [Populus trichocarpa]	3.0e-17	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL62

Fln msg: Distance to subject end: 175 aas, your sequence is shorter than subject: 77 - 443

Fln protein: YCRHRGEYMLVYEYMSGGDLECLLYRQQNPVLPWERRLGIALDCAEGLAYLRLFPGGAVVHRDIKPTNILLNESGQA

Protein Length: 78

Fln nts: GCTACTGCCGACACAGGGGCGAGTACATGCTCGTTTATGAATACATGTCCGGAGGCGACCTTGAGTGTCTCCTGTACAGACAGCAGAATCCCGTGCTGCCATGGGAGCGGCGGCTAGGAATCGCGCTAGACTGCGCGGAGGGGCTGGCATACCTCCGCCTCTTTCCTGGTGGCGCGGTCGTACACCGCGACATCAAGCCCACCAACATACTTCTCAACGAGTCCGGGCAGGCG

Fln Alignment:

AllPine_a_c55903___YCRHRGEYMLVYEYMSGGDLECLLYRQQNPVLPWERRLGIALDCAEGLAYLRLFPGGAVVHRDIKPTNILLN
B8LL62________________YCVDKGERMLVYEFMSNGSLATHLYDKDARILSWEERVSTAQDVSRGIEYLHDGAVPPVVHRDIKSANILLD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain