SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene120155

Length: 315 nt

UniGene Fasta

>sp_v3.0_unigene120155
TGGCCTGCAATATCTGGATCTTTCGGTAAATTCATTCACTGGTCGAATTCCTCCAGAGTTGGGAAAGCTTGACAAATTAGAGGGACTGTCTCTGTTTTCCAACAATATTACTGGAAGCATTCCTTCGCAACTTGGAATGCTTAAGAATCTAGAGTCACTCTCTCTATCTAGCAATGCCTATCTTTCTGGGAACATTCCCCCTGAGCTAGGTGGACTCGGGCGCCTGAAAACTCTTTCTCTTTTTCTCACCAATTCAAGCGGAAATATTCCACCTGAATTAGGGCAGCTGTCTAGTTTGGAAATCATGGACATTTA

Ace file of the UniGene sp_v3.0_unigene120155

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Sma3	Leucine-rich repeat receptor protein kinase EXS, putative	-	-	3.811e-06	-

Source	Gene names
Sma3	AT2G25790; AT4G36180; AT4g36180; At1g73070; At1g73070/F3N23_27; At2g25790; B1307A11.12; EILP; F23E13.70; F3N23.27; FOR1; GSVIVT00006962001; GSVIVT00017827001; GSVIVT00017830001; GSVIVT00020450001; GSVIVT00021114001; GSVIVT00028528001; GSVIVT00028531001; G

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Rapid ALkalinization Factor	IPR008801	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G24240.1	Leucine-rich repeat receptor-like protein kinase family protein chr3:8780551-8784150 FORWARD LENGTH=1141	2.0e-16	45%
RefSeq	Arabidopsis thaliana	NP_189066.1	receptor-like protein kinase 2 [Arabidopsis thaliana]	2.0e-16	45%
RefSeq	Populus trichocarpa	XP_002322457.1	predicted protein [Populus trichocarpa]	3.0e-17	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: Distance to subject end: 519 aas, your sequence is shorter than subject: 104 - 946

Fln protein: GLQYLDLSVNSFTGRIPPELGKLDKLEGLSLFSNNITGSIPSQLGMLKNLESLSLSSNAYLSGNIPPELGGLGRLKTLSLFLTNSSGNIPPELGQLSSLEIMDI

Protein Length: 105

Fln nts: TGGCCTGCAATATCTGGATCTTTCGGTAAATTCATTCACTGGTCGAATTCCTCCAGAGTTGGGAAAGCTTGACAAATTAGAGGGACTGTCTCTGTTTTCCAACAATATTACTGGAAGCATTCCTTCGCAACTTGGAATGCTTAAGAATCTAGAGTCACTCTCTCTATCTAGCAATGCCTATCTTTCTGGGAACATTCCCCCTGAGCTAGGTGGACTCGGGCGCCTGAAAACTCTTTCTCTTTTTCTCACCAATTCAAGCGGAAATATTCCACCTGAATTAGGGCAGCTGTCTAGTTTGGAAATCATGGACATTTA

Fln Alignment:

AllPine_a_c55838___LQYLDLSVNSFTGRIPPELGKLDKLEGLSLFSNNITGSIPSQLGMXXXXXXXXXXXXXXXXXXIPPELGGLGRLKTLSLFLTNSSGNIPPELGQLSSLEIM
C0PTA1________________ISHINLSFNNLSGVIPVDLGSLQKLEWLGLSDNNLSGAIPVDLG-SLQKLQILDLSDNALDNIIPPSLGNCSSLQDLSLSSNRLSGSIPHHLGNLSSLQTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain