SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene120033

Length: 220 nt

UniGene Fasta

>sp_v3.0_unigene120033
CTTCTCCCTCAAAGTTGCCTCTGCTTCAAGGAGAAGGAAGATGATAATCTCCTTTTGCAACAAAGACTGCACCAATATGAATCCAGATGGTCTGAATATGAAGCCAAGATGACCTCCATGGAGGAAATGTGGCAGAAACAGATGGTGTCATTACAACTGAGCCTCGTTGCAGCTAAGAAAAGTCTGGCTGATGAAGCTATGTTTAAGCAAACAAGGCAGG

Ace file of the UniGene sp_v3.0_unigene120033

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	myosin [Arabidopsis thaliana]	-	-	4.0e-15	73%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	69%
Sma3	Myosin	-	-	1.092e-10	-

Source	Gene names
Sma3	ATM; At1g50360; At3g19960; At5g54280; F14I3.6; GSVIVT00003146001; GSVIVT00027592001; LOC_Os10g34710; OSJNBb0049A16.3; Os10g0488800; OsI_26483; OsI_34110; OsJ_24744; OsJ_31968; PHYPADRAFT_116702; PHYPADRAFT_133521; PHYPADRAFT_145495; PHYPADRAFT_192171; POP

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	myosin complex	GO:0016459	Cellular Component	-
Sma3	motor activity	GO:0003774	Molecular Function	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	actin filament-based movement	GO:0030048	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G19960.2	-	1.0e-19	73%
RefSeq	Arabidopsis thaliana	NP_188630.1	myosin 1 [Arabidopsis thaliana]	2.0e-19	73%
RefSeq	Populus trichocarpa	XP_002310637.1	predicted protein [Populus trichocarpa]	6.0e-19	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TGX9

Fln msg: Distance to subject end: 158 aas, your sequence is shorter than subject: 73 - 1057

Fln protein: LLPQSCLCFKEKEDDNLLLQQRLHQYESRWSEYEAKMTSMEEMWQKQMVSLQLSLVAAKKSLADEAMFKQTRQ

Protein Length: 74

Fln nts: CTTCTCCCTCAAAGTTGCCTCTGCTTCAAGGAGAAGGAAGATGATAATCTCCTTTTGCAACAAAGACTGCACCAATATGAATCCAGATGGTCTGAATATGAAGCCAAGATGACCTCCATGGAGGAAATGTGGCAGAAACAGATGGTGTCATTACAACTGAGCCTCGTTGCAGCTAAGAAAAGTCTGGCTGATGAAGCTATGTTTAAGCAAACAAGGCAGG

Fln Alignment:

AllPine_a_c55692___KEKEDDNLLLQQRLHQYESRWSEYEAKMTSMEEMWQKQMVSLQLSLVAAKKSLADEAMFKQT
A9TGX9________________REKEEDNAMLRQRLLHYEARWMEYEAKMSSMEDMWQKQMSSLQLSLAAAKKSLATDEFLPQT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain