SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene120012

Length: 225 nt

UniGene Fasta

>sp_v3.0_unigene120012
ATATTTCTCGTGGTGTTGCGGAGCTTCATGCAGCAGGTGTCTCTTGTATGAATCTCAAACCATCCAACCTTCTTCTGGATGCAAGAGGGCGAGCAGTGGTTTCTGATTTTGGTCTTCCAGAAATTTTGAAGAAACCTCAATGCAGAAGATCTCGCTCAACCCCGGAGGATGATGTGACAAGGACACATTCATGTGTGGAGTGTACTATGTTGAATCCTCATTATA

Ace file of the UniGene sp_v3.0_unigene120012

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ankyrin-repeat containing protein [Arabidopsis thaliana]	-	-	9.0e-19	62%
FL-Next	sp=E3 ubiquitin-protein ligase KEG; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%

Source	Gene names
Sma3	At5g13530; GSVIVT00030895001; KEG; RCOM_1452000; T6I14.60; VITISV_007720;

Source	GOs	Term	Type	Identity
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G13530.1	" KEG protein kinases;ubiquitin-protein ligases chr5:4345618-4354369 FORWARD LENGTH=1625"	8.0e-24	62%
RefSeq	Arabidopsis thaliana	NP_001190303.1	E3 ubiquitin-protein ligase KEG [Arabidopsis thaliana]	1.0e-23	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FY48

Fln msg: Distance to subject end: 1301 aas, your sequence is shorter than subject: 74 - 1625

Fln protein: ISRGVAELHAAGVSCMNLKPSNLLLDARGRAVVSDFGLPEILKKPQCRRSRSTPEDDVTRTHSCVECTMLNPHY

Protein Length: 75

Fln nts: ATATTTCTCGTGGTGTTGCGGAGCTTCATGCAGCAGGTGTCTCTTGTATGAATCTCAAACCATCCAACCTTCTTCTGGATGCAAGAGGGCGAGCAGTGGTTTCTGATTTTGGTCTTCCAGAAATTTTGAAGAAACCTCAATGCAGAAGATCTCGCTCAACCCCGGAGGATGATGTGACAAGGACACATTCATGTGTGGAGTGTACTATGTTGAATCCTCATTATA

Fln Alignment:

AllPine_a_c55661___ISRGVAELHAAGVSCMNLKPSNLLLDARGRAVVSDFGLPEILKKPQCRRSRSTPEDDVTRTHSCVECTMLNPHY
Q9FY48________________VARGVAELHAAGVICMNIKPSNLLLDASGNAVVSDYGLAPILKKPTCQKTR--PEFDSSKVTLYTDCVTLSPHY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain