SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene119944

Length: 398 nt

UniGene Fasta

>sp_v3.0_unigene119944
CACAAGCGAACGCCACCATTTTCTTAGCGAAGTTCTATGGGCGTGCTGGGCTGACGAATCTCATTAGCAACGGCCCCGAGCATTTGACGCCTGCAATATTCAGGTCTCTTCTCTACGAAGCATGTGGCAGAATGGTAAATCCAGTATATGGATTACTGGGCCTTGTGTGGTTGGGTAAGTGGGCAGAGTGCCAGGCGGGGGTGGACAGCATCCTGGGGGGATCCTTCCGTGCTGTTTCACAGGGAAATTTCATGTCCTCGGAATTTAATAGTATGATGCCCATGGAAGCCACAGCCGTGCGCGAGCTGCGGAGGTCAGTGAAGTCAAGTAGCAAATTGAAGGGAATATCGCATGCGAAGCACAGAAGGGAAGGCGAGCGTGTACCCCTTAACAACCAT

Ace file of the UniGene sp_v3.0_unigene119944

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LOB domain-containing protein 42 [Arabidopsis thaliana] sp\|Q9CA30.1\|LBD42_ARATH RecName: Full=LOB domain-containing protein 42; AltName: Full=ASYMMETRIC LEAVES 2-like protein 36; Short=AS2-like protein 36 gb\|AAG52389.1\|AC011915_3 hypothetical protein; 483	-	-	7.0e-27	75%
FL-Next	sp=LOB domain-containing protein 42; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	75%
Sma3	LOB domain-containing protein, putative	-	-	6.164e-13	-

Source	Gene names
Sma3	ASL36; ASL37; ASL39; ASL40; ASL41; GSVIVT00001451001; GSVIVT00014946001; GSVIVT00017674001; GSVIVT00030342001; GSVIVT00038218001; LBD37; LBD38; LBD39; LBD40; LBD42; LOC_Os03g33090; LOC_Os03g41330; OSJNBa0035N15.7; Os01g0129600; Os01g0511000; Os03g0445700;

Source	GOs	Term	Type	e value	Identity
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lateral organ boundaries, LOB	IPR004883	-	0.0	-
Sma3	Asymmetric leaves, AS2/LOB	IPR017414	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G68510.1	LBD42 LOB domain-containing protein 42 chr1:25707033-25708004 FORWARD LENGTH=233	1.0e-34	75%
RefSeq	Arabidopsis thaliana	NP_177018.1	LOB domain-containing protein 42 [Arabidopsis thaliana]	2.0e-34	75%
RefSeq	Populus trichocarpa	XP_002312397.1	predicted protein, partial [Populus trichocarpa]	6.0e-35	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9CA30

Fln msg: Distance to subject end: 68 aas, your sequence is shorter than subject: 132 - 233

Fln protein: QANATIFLAKFYGRAGLTNLISNGPEHLTPAIFRSLLYEACGRMVNPVYGLLGLVWLGKWAECQAGVDSILGGSFRAVSQGNFMSSEFNSMMPMEATAVRELRRSVKSSSKLKGISHAKHRREGERVPLNNH

Protein Length: 133

Fln nts: CACAAGCGAACGCCACCATTTTCTTAGCGAAGTTCTATGGGCGTGCTGGGCTGACGAATCTCATTAGCAACGGCCCCGAGCATTTGACGCCTGCAATATTCAGGTCTCTTCTCTACGAAGCATGTGGCAGAATGGTAAATCCAGTATATGGATTACTGGGCCTTGTGTGGTTGGGTAAGTGGGCAGAGTGCCAGGCGGGGGTGGACAGCATCCTGGGGGGATCCTTCCGTGCTGTTTCACAGGGAAATTTCATGTCCTCGGAATTTAATAGTATGATGCCCATGGAAGCCACAGCCGTGCGCGAGCTGCGGAGGTCAGTGAAGTCAAGTAGCAAATTGAAGGGAATATCGCATGCGAAGCACAGAAGGGAAGGCGAGCGTGTACCCCTTAACAACCAT

Fln Alignment:

AllPine_a_c55578___QANATIFLAKFYGRAGLTNLISNGPEHLTPAIFRSLLYEACGRMVNPVYGLLGLVWLGKWAECQAGVDSILGG
Q9CA30________________QANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain