SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene119924

Length: 201 nt

UniGene Fasta

>sp_v3.0_unigene119924
TGACTGGAGAAAGAGATACAAGATCATCCATGATATGGCTTGGGGATTGGCTTTCTTGCATGACAAATCCAGGGATAGGATTCTTCATTTGGACGTGAAGCCTCAAAACATTCTGCTGGATGAGAATTTCGGAGCCAAACTTGCAGATTTTGGTCTGGCCAAGTTAATGGACAGGGCTCAGAGCCACGCATTTACTCGTGT

Ace file of the UniGene sp_v3.0_unigene119924

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	OSJNBb0018A10.13 protein n=1 Tax=Oryza sativa RepID=Q7XMC2_ORYSA	-	-	3.0e-17	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Chromosome chr12 scaffold_18, whole genome shotgun sequence	-	-	3.259e-19	-

Source	Gene names
Sma3	AT4g32300; At4g32300; B1099D03.46; B1423D04.25; F10M6.60; F8B4.10; GSVIVT00017302001; GSVIVT00018598001; GSVIVT00018599001; GSVIVT00018786001; GSVIVT00018787001; GSVIVT00018788001; GSVIVT00018795001; GSVIVT00018798001; GSVIVT00018800001; GSVIVT00018801001

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	phospholipase C activity	GO:0004629	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3		GO:0007242	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Phospholipase C, phosphatidylinositol-specific , X domain	IPR000909	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	PAN-1 domain	IPR003014	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G32300.1	SD2-5 S-domain-2 5 chr4:15599970-15602435 FORWARD LENGTH=821	4.0e-20	60%
RefSeq	Arabidopsis thaliana	NP_194957.2	protein S-DOMAIN-2 5 [Arabidopsis thaliana]	6.0e-20	60%
RefSeq	Populus trichocarpa	XP_002304906.1	predicted protein, partial [Populus trichocarpa]	8.0e-22	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NM60

Fln msg: Distance to subject end: 158 aas, your sequence is shorter than subject: 66 - 431

Fln protein: DWRKRYKIIHDMAWGLAFLHDKSRDRILHLDVKPQNILLDENFGAKLADFGLAKLMDRAQSHAFTR

Protein Length: 67

Fln nts: TGACTGGAGAAAGAGATACAAGATCATCCATGATATGGCTTGGGGATTGGCTTTCTTGCATGACAAATCCAGGGATAGGATTCTTCATTTGGACGTGAAGCCTCAAAACATTCTGCTGGATGAGAATTTCGGAGCCAAACTTGCAGATTTTGGTCTGGCCAAGTTAATGGACAGGGCTCAGAGCCACGCATTTACTCGTGT

Fln Alignment:

AllPine_a_c55548___DWRKRYKIIHDMAWGLAFLHDKSRDRILHLDVKPQNILLDENFGAKLADFGLAKLMDR-AQSHAFT
A9NM60________________DWKTRYSIALDTARGLAYLHEESRLCILHLDVKPQNILVDEYFKAKVSDFGMARCLKRDIESHLVT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain