SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene119915

Length: 408 nt

UniGene Fasta

>sp_v3.0_unigene119915
GTTCATTGTGATCTGAAACCTTCCAACGTTTTACTGGATGAGACAATGACGGCTCGTGTTGGAGATTTCGGTATTTCACGCCTCATGAACGATTCAACAGCAGCAGCAGCCTCAGGGGACACCTCCAGTCATGTGATCGGGTCTGTTGGTTACATTGCACCAGAATATGGTACAGGAGGGCGTCCGTCCATGAAAGGGGACGTATACAGCTACGGCATCTTGGTACTGGAAATGATAACGGGAAAGAAGCCCACAGATGCAGTGTTTTCAGAAGAAGAGCAATCATTGCAGAGTTGGGTGGGCGATGCATTCCCCGACAGATTGTTGGAGGTGATTGACACGACTTTGGTGGAGGAGATTAGAATGGAAGAAGAGGATGAAGAACATGAATCACATGATGTAAGTGAA

Ace file of the UniGene sp_v3.0_unigene119915

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase Xa21 [Oryza sativa Japonica Group]	-	-	4.0e-29	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Leucine Rich Repeat family protein	-	-	8.114e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	1.819e-11	-

Source	Gene names
Sma3	AT3G47090; AT3G47570; AT3G47580; At2g24130; At3g47090; At3g47570; At3g47580; B1292H11.1; B1307A11.12; B1307A11.13; B1307A11.7; DUPR11.16; F13I12.140; F1P2.130; GSVIVT00003509001; GSVIVT00010796001; GSVIVT00014285001; GSVIVT00014914001; GSVIVT00017170001;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	NPH3	IPR004249	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF1618	IPR011676	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G47570.1	Leucine-rich repeat protein kinase family protein chr3:17527611-17530748 FORWARD LENGTH=1010	1.0e-30	50%
RefSeq	Arabidopsis thaliana	NP_566892.1	putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana]	2.0e-30	50%
RefSeq	Populus trichocarpa	XP_002317696.1	predicted protein [Populus trichocarpa]	6.0e-32	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPH3

Fln msg: Distance to subject end: 33 aas, your sequence is shorter than subject: 136 - 360

Fln protein: VHCDLKPSNVLLDETMTARVGDFGISRLMNDSTAAAASGDTSSHVIGSVGYIAPEYGTGGRPSMKGDVYSYGILVLEMITGKKPTDAVFSEEEQSLQSWVGDAFPDRLLEVIDTTLVEEIRMEEEDEEHESHDVSE

Protein Length: 137

Fln nts: GTTCATTGTGATCTGAAACCTTCCAACGTTTTACTGGATGAGACAATGACGGCTCGTGTTGGAGATTTCGGTATTTCACGCCTCATGAACGATTCAACAGCAGCAGCAGCCTCAGGGGACACCTCCAGTCATGTGATCGGGTCTGTTGGTTACATTGCACCAGAATATGGTACAGGAGGGCGTCCGTCCATGAAAGGGGACGTATACAGCTACGGCATCTTGGTACTGGAAATGATAACGGGAAAGAAGCCCACAGATGCAGTGTTTTCAGAAGAAGAGCAATCATTGCAGAGTTGGGTGGGCGATGCATTCCCCGACAGATTGTTGGAGGTGATTGACACGACTTTGGTGGAGGAGATTAGAATGGAAGAAGAGGATGAAGAACATGAATCACATGATGTAAGTGAA

Fln Alignment:

AllPine_a_c55536___VHCDLKPSNVLLDETMTARVGDFGISRLMNXXXXXXXXXXXXXHVIGSVGYIAPEYGTGGRPSMKGDVYSYGILVLEMITGKKPTDAVFSEEEQSLQSWV
B8LPH3________________IHRDIKSSNILLDEEMEARISDFGLATLINPDQTHVSTI-----VAGTFGYLAPEYVETGRATEKGDVYSYGVVLLELITGKRPTDEAFVEKGNNIVTWI

SSRs (tot: 1)

Start position	End position	Sequence	Length
98	110	CAG CAG CAG CAG C	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain