SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene119857

Length: 412 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene119857
ACTTTCCGAATAAGAGCCTTGATCAATTCCTATCCAATCCAGAAAATCGCGAAGGCCTTGATTGGCACAAGCGTTACAACATCATCCAGGGAATAGCTCGAGGGCTTCTCTATCTTCACGAGGATTCTCAAGTGCGCATTGTTCATGGAGATATTAAACCAAGTAATATTCTGTTGGACGAGAGACTGAACCCTAAGATAGCAGATTTCGGCACTGCAAAACTTTTCCCTGAAGATGAGACTCACGTCATTGCTACAACATGTATAGGAACTCCCGGCTATATGCCACCAGAGTATCTTTTTGAGAGGAAGTTATCTGTAAGAACCGATGTCTACAGCTTTGGTATTGTTCTCCTGGAACTTATCACTGGAGAAAAGATATCATCTACCGAGTTTTTAGAACGGGTATGGTG

Ace file of the UniGene sp_v3.0_unigene119857 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris]	-	-	1.0e-38	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Chromosome undetermined scaffold_302, whole genome shotgun sequence	-	-	5.701e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	6.919e-08	-
Sma3	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	1.767e-11	-

Source	Gene names
Sma3	At4g04490; At4g04500; At4g04510; At4g04540; At4g04570; At4g05200; At4g11460; At4g11470; At4g11490; At4g11530; At4g21230; At4g21410; At4g23140; At4g23160; At4g23180; At4g23210; At4g23220; At4g23230; At4g23240; At4g23250; At4g23280; At4g23290; At4g23320; B0

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	response to molecule of bacterial origin	GO:0002237	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Transcription factor TFIIB	IPR000812	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Homeobox protein, antennapedia type, conserved site	IPR001827	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3		IPR017909	-	-
Sma3	Integrin alpha chain, C-terminal cytoplasmic region, conserved site	IPR018184	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G04540.1	CRK39 cysteine-rich RLK (RECEPTOR-like protein kinase) 39 chr4:2259580-2262138 FORWARD LENGTH=659	58%
RefSeq	Arabidopsis thaliana	NP_192363.1	putative cysteine-rich receptor-like protein kinase 39 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002317220.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQB9

Fln msg: Distance to subject end: 120 aas, your sequence is shorter than subject: 136 - 290

Fln protein: FPNKSLDQFLSNPENREGLDWHKRYNIIQGIARGLLYLHEDSQVRIVHGDIKPSNILLDERLNPKIADFGTAKLFPEDETHVIATTCIGTPGYMPPEYLFERKLSVRTDVYSFGIVLLELITGEKISSTEFLERVW

Protein Length: 137

Fln nts: ACTTTCCGAATAAGAGCCTTGATCAATTCCTATCCAATCCAGAAAATCGCGAAGGCCTTGATTGGCACAAGCGTTACAACATCATCCAGGGAATAGCTCGAGGGCTTCTCTATCTTCACGAGGATTCTCAAGTGCGCATTGTTCATGGAGATATTAAACCAAGTAATATTCTGTTGGACGAGAGACTGAACCCTAAGATAGCAGATTTCGGCACTGCAAAACTTTTCCCTGAAGATGAGACTCACGTCATTGCTACAACATGTATAGGAACTCCCGGCTATATGCCACCAGAGTATCTTTTTGAGAGGAAGTTATCTGTAAGAACCGATGTCTACAGCTTTGGTATTGTTCTCCTGGAACTTATCACTGGAGAAAAGATATCATCTACCGAGTTTTTAGAACGGGTATGGTG

Fln Alignment:

AllPine_a_c55462___PNKSLDQFLSNPENREGLDWHKRYNIIQGIARGLLYLHEDSQVRIVHGDIKPSNILLDERLNPKIADFGTAKLFPEDETHVIATTCIGTPGYMPPEYLFERKLSVRTDVYSFGIVLLELITGEK
A9NQB9________________PNKSLDKLLFNPERRKVLDWQKRYNIIIGVARGLLYLHQDSQLRIIHRDVKVNNILLDDKLNPKIADFGLARLFPDDETHV-HTRVAGTYGYMAPEYAMLGQLSVKADVYSFGVVLLEIVSGRR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain