SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene119849

Length: 222 nt

UniGene Fasta

>sp_v3.0_unigene119849
CGGCTCCTCATCATGCTGTAAAGGGCTTGTGGATAAACATTGAGAAAGATAAGCTATTTTGTCTCCTTGGGCCCAATGGAGCTGGGAAAACAACCACAATCAACTGCCTTACTGGAATTACACCAGTAACAGCTGGTGAAGCACTGATCTATGGGCAGTCTATTAAAAGCACAAGTGGAAAGTCAAACATTCGAAGTATAATGGGAGTATGTCCTCAGTTTG

Ace file of the UniGene sp_v3.0_unigene119849

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC-type transport-like protein [Arabidopsis thaliana]	-	-	3.0e-27	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	ABC transporter family, retinal flippase subfamily	-	-	2.035e-08	-

Source	Gene names
Sma3	ATH1; ATH11; ATH15; At3g47730; At5g61690; At5g61730; CHLREDRAFT_121110; GSVIVT00000113001; K11J9.22; MAC9.4; OJ1198_B10.9; Os08g0398000; OsI_29139; OsJ_27205; PHYPADRAFT_190702; POPTRDRAFT_581361; POPTRDRAFT_823332; PtrATH1; PtrATH2; RCOM_1514310; T23J7.6

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G61690.1	ATATH15, ATH15 ABC2 homolog 15 chr5:24789495-24793487 REVERSE LENGTH=919	8.0e-34	76%
RefSeq	Arabidopsis thaliana	NP_200977.2	ABC transporter A family member 11 [Arabidopsis thaliana]	1.0e-33	76%
RefSeq	Populus trichocarpa	XP_002330122.1	ABC transporter family, retinal flippase subfamily [Populus trichocarpa]	6.0e-34	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRA1

Fln msg: Distance to subject end: 367 aas, your sequence is shorter than subject: 73 - 788

Fln protein: APHHAVKGLWINIEKDKLFCLLGPNGAGKTTTINCLTGITPVTAGEALIYGQSIKSTSGKSNIRSIMGVCPQF

Protein Length: 74

Fln nts: CGGCTCCTCATCATGCTGTAAAGGGCTTGTGGATAAACATTGAGAAAGATAAGCTATTTTGTCTCCTTGGGCCCAATGGAGCTGGGAAAACAACCACAATCAACTGCCTTACTGGAATTACACCAGTAACAGCTGGTGAAGCACTGATCTATGGGCAGTCTATTAAAAGCACAAGTGGAAAGTCAAACATTCGAAGTATAATGGGAGTATGTCCTCAGTTTG

Fln Alignment:

AllPine_a_c55454___APHHAVKGLWINIEKDKLFCLLGPNGAGKTTTINCLTGITPVTAGEALIYGQSIKSTSGKSNIRSIMGVCPQF
C0PRA1________________APHHAVKGLWINIEKDKLFCLLGPNGAGKTTTINCLTGITPITAGDALIYGHSIKSTSGMSNIRSVMGVCPQF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain