SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene119844

Length: 519 nt

UniGene Fasta

>sp_v3.0_unigene119844
AGGACCTCAAGAAGCTGAACAAGAACAAGAAGCTGGTCAAGAAGCTGGCCAAGAAGTACGCTGCCTTTGTGGCCTCAGAGTCGGTGATCAAGCAGATCCCCCGTCTCTTGGGGCCCGGCCTCAACAAGGCCGGCAAGTTCCCCACCCTGGTGTCACACAATGACAACCTGGAGACAAAGGTGAACGAGATCAAGGCCAGCATCAAGTTCCAGCTGAAGAAGGTGCTGTGCCTGGGCGTGGCAGTCGGCAACGTGGGCATGACCGACAAGGAGCTGTACGTCAACACCCAGATGTCCGTCAACTTCCTGGTGTCGCTGCTGAAGAAGAACTGGCAGAACGTGCGGTGCTTGTACATCAAGAGCTCCATGGGCAAGCCCGTGCGGTTGTACTAGGTCCTCGGCCGACTACCCACCCACAAGTCACCGAGCTGTTGCCATGTTGGACTGGCTTGCACTGAGGACCTCAGCAACAGAGTTGGTGCATCAGTGACCAGCATGGTGTAATGCGGAGATTTGGGCC

Ace file of the UniGene sp_v3.0_unigene119844

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein n=2 Tax=Chlorella RepID=A9XHZ2_CHLVU	-	-	0.0	81%
FL-Next	sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Ribosomal protein L1	-	-	8.709e-38	-

Source	Gene names
Sma3	At1g08360; At2g27530; At5g22440; CHLREDRAFT_195585; F10A12.22; F15K20.37; GSVIVT00021612001; GSVIVT00021613001; GSVIVT00037354001; GSVIVT00037355001; MICPUCDRAFT_49658; MICPUN_95416; MWD9.24; OJ1150_A11.31; OSJNBa0073A18.28; OSTLU_45590; Os01g0860300; Os0

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Ribosomal protein L1	IPR002143	-	-
Sma3	Nonaspanin (TM9SF)	IPR004240	-	-
Sma3	Glutaredoxin active site	IPR011767	-	-
Sma3	Ribosomal protein L1, 2-layer alpha/beta-sandwich	IPR016094	-	-
Sma3	Ribosomal protein L1, 3-layer alpha/beta-sandwich	IPR016095	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G27530.1	PGY1 Ribosomal protein L1p/L10e family chr2:11763443-11764570 REVERSE LENGTH=216	78%
RefSeq	Arabidopsis thaliana	NP_850104.1	60S ribosomal protein L10a-2 [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002328252.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNV9

Fln msg: your sequence is shorter than subject: 130 - 216

Fln protein: DLKKLNKNKKLVKKLAKKYAAFVASESVIKQIPRLLGPGLNKAGKFPTLVSHNDNLETKVNEIKASIKFQLKKVLCLGVAVGNVGMTDKELYVNTQMSVNFLVSLLKKNWQNVRCLYIKSSMGKPVRLY*

Protein Length: 131

Fln nts: AGGACCTCAAGAAGCTGAACAAGAACAAGAAGCTGGTCAAGAAGCTGGCCAAGAAGTACGCTGCCTTTGTGGCCTCAGAGTCGGTGATCAAGCAGATCCCCCGTCTCTTGGGGCCCGGCCTCAACAAGGCCGGCAAGTTCCCCACCCTGGTGTCACACAATGACAACCTGGAGACAAAGGTGAACGAGATCAAGGCCAGCATCAAGTTCCAGCTGAAGAAGGTGCTGTGCCTGGGCGTGGCAGTCGGCAACGTGGGCATGACCGACAAGGAGCTGTACGTCAACACCCAGATGTCCGTCAACTTCCTGGTGTCGCTGCTGAAGAAGAACTGGCAGAACGTGCGGTGCTTGTACATCAAGAGCTCCATGGGCAAGCCCGTGCGGTTGTACTAG___GTCCTCGGCCGACTACCCACCCACAAGTCACCGAGCTGTTGCCATGTTGGACTGGCTTGCACTGAGGACCTCAGCAACAGAGTTGGTGCATCAGTGACCAGCATGGTGTAATGCGGAGATTTGGGCC

Fln Alignment:

AllPine_a_c55448___YAAFVASESVIKQIPRLLGPGLNKAGKFPTLVSHNDNLETKVNEIKASIKFQLKKVLCLGVAVGNVGMTDKELYVNTQMSVNFLVSLLKKNWQNVRCLYIKSSMGKPVRLY
A9NNV9________________YHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNCGMEEKQVFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKPARVF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain