SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene119775

Length: 383 nt

UniGene Fasta

>sp_v3.0_unigene119775
ATTTCAAGTGTCAGACATGCGGAGAGGGAATGTCAGAGTGCCCTGGTCATTTTGGTCATATCGAGTTGGCGAGGCCGGTGTTTCACCCAGGTTTTATCATTAAAGTGAAGAAGATTCTGGAGTGTATCTGTGTGAACTGTGGAAGGCTAAAAGCCGATATCGTGAGTTGAATTTCGTTCCTCTACTCGTTTCGCACCCCACCACCCAATTTTCTGGGGGCTCTCTCCATAATCCATCGGAGAACCCCAAACCCGCACCGCGGCAGTACCTCGCACAAACGAGGCGTTTGACCCACTGCGGCGTGGTCTGCGCGCGTTTCGATCGCTTGATCGCCGCGTGGACTATTGCAAACGCCCAGTGATGGTTGGACACGAGGTGCGCGG

Ace file of the UniGene sp_v3.0_unigene119775

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase n=4 Tax=Agaricomycetidae RepID=D8PLU0_SCHCM	-	-	1.0e-25	96%
FL-Next	sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%

Source	Gene names
Sma3	RPB1;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	-
Sma3		GO:0006350	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase, alpha subunit	IPR000722	-	-
Sma3	RNA polymerase, N-terminal	IPR006592	-	-
Sma3	RNA polymerase Rpb1, domain 1	IPR007080	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G35800.1	NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS RNA polymerase II large subunit chr4:16961115-16967892 REVERSE LENGTH=1839	2.0e-15	52%
RefSeq	Arabidopsis thaliana	NP_195305.2	DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]	2.0e-15	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P18616

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1649 aas, your sequence is shorter than subject: 56 - 1839

Fln protein: FKCQTCGEGMSECPGHFGHIELARPVFHPGFIIKVKKILECICVNCGRLKADIVS*

Protein Length: 57

Fln nts: ATTTCAAGTGTCAGACATGCGGAGAGGGAATGTCAGAGTGCCCTGGTCATTTTGGTCATATCGAGTTGGCGAGGCCGGTGTTTCACCCAGGTTTTATCATTAAAGTGAAGAAGATTCTGGAGTGTATCTGTGTGAACTGTGGAAGGCTAAAAGCCGATATCGTGAGTTGAATTTCGTTCCTCTACTCGTTTCGCACCCCACCACCCAATTTTCTGGGGGCTCTCTCCATAATCCATCGGAGAACCCCAAACCCGCACCGCGGCAGTACCTCGCACAAACGAGGCGTTTGACCCACTGCGGCGTGGTCTGCGCGCGTTTCGATCGCTTGATCGCCGCGTGGACTATTGCAAACGCCCAGTGATGGTTGGACACGAGGTGCGCGG

Fln Alignment:

AllPine_a_c55367___KCQTCGEGMSECPGHFGHIELARPVFHPGFIIKVKKILECICVNCGRLKAD
P18616________________KCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILAD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain