SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene119770

Length: 366 nt

UniGene Fasta

>sp_v3.0_unigene119770
GGAAATATTGTCTGGGGGCATGTTGTTTCTAAGGATCTCATTAACTGGCATTCATTGGATCCTGCCATTGTTCCGAGTGAATGGTATGATATAAAGGGCTGCTGGTCCGGGTCGGCGACGTTACTGCCCGGAGACAAGCCTGTAATTCTTTATACTGGAGGGACCAATTCATCCCAACAGGTGCAAAACATGGCCGTTCCTAAGAATACCTCCGATCCTCTTTTGAGGGAATGGGTGAAGATATCTCAGAATCCTATTCTGATTCCAGGCAATGGAATTGATGGGACTTCCTTTAGGGATCCCACCACTGGATGGCTGGGCACGGACGGCAAATGGAGGATTGTAGTTGGAAATAGAGTAATCGCA

Ace file of the UniGene sp_v3.0_unigene119770

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-fructofuranosidase, insoluble isoenzyme 3, putative n=1 Tax=Ricinus communis RepID=B9SWG8_RICCO	-	-	4.99983e-42	63%
FL-Next	sp=Beta-fructofuranosidase, cell wall isozyme; Pisum sativum (Garden pea).	-	-	0.0	63%
Sma3	Beta-fructofuranosidase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.4.1.10-	-	1.055e-07	-
Sma3	Beta-fructofuranosidase.	EC:3.2.1.26	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Galactose metabolism	00052		0.0	%
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Metabolic pathways	01100		0.0	%
Sma3		EC:3.2.1.8-	-	8.47e-13	-

Source	Gene names
Sma3	1-FEH; 1-FEH w1; 1-FEH w3; 1-SST; 1-feh; 1-feh IIa; 1-feh IIb; 1-sst; 6-FEH; 6-feh; A211; AI; AIV-1; AT3G13790; At1g12240; At1g55120; At1g62660; At1g62660/T3P18.21; At2g36190; At3g13784; At3g13790; At3g52600; At5g11920; BFRUCT1; BFRUCT2; BIN44; BIN46; Bet

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	beta-fructofuranosidase activity	GO:0004564	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	fructan beta-(2,6)-fructosidase activity	GO:0033949	Molecular Function	-
Sma3	1,2-beta-fructan 1F-fructosyltransferase activity	GO:0047207	Molecular Function	-
Sma3	sucrose 1F-fructosyltransferase activity	GO:0050306	Molecular Function	-
Sma3	fructan beta-fructosidase activity	GO:0051669	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Glycoside hydrolase, family 32	IPR001362	-	-
Sma3	Histone H4	IPR001951	-	-
Sma3	Glycosyl hydrolases family 32, N-terminal	IPR013148	-	-
Sma3	Glycosyl hydrolase family 32, C-terminal	IPR013189	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Glycoside hydrolase, family 32, active site	IPR018053	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G13790.1	ATCWINV1, ATBFRUCT1 Glycosyl hydrolases family 32 protein chr3:4533084-4535831 REVERSE LENGTH=584	61%
RefSeq	Arabidopsis thaliana	NP_001189881.1	beta-fructofuranosidase [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002323419.1	predicted protein, partial [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q43089

Fln msg: Distance to subject end: 346 aas, your sequence is shorter than subject: 122 - 555

Fln protein: GNIVWGHVVSKDLINWHSLDPAIVPSEWYDIKGCWSGSATLLPGDKPVILYTGGTNSSQQVQNMAVPKNTSDPLLREWVKISQNPILIPGNGIDGTSFRDPTTGWLGTDGKWRIVVGNRVIA

Protein Length: 123

Fln nts: GGAAATATTGTCTGGGGGCATGTTGTTTCTAAGGATCTCATTAACTGGCATTCATTGGATCCTGCCATTGTTCCGAGTGAATGGTATGATATAAAGGGCTGCTGGTCCGGGTCGGCGACGTTACTGCCCGGAGACAAGCCTGTAATTCTTTATACTGGAGGGACCAATTCATCCCAACAGGTGCAAAACATGGCCGTTCCTAAGAATACCTCCGATCCTCTTTTGAGGGAATGGGTGAAGATATCTCAGAATCCTATTCTGATTCCAGGCAATGGAATTGATGGGACTTCCTTTAGGGATCCCACCACTGGATGGCTGGGCACGGACGGCAAATGGAGGATTGTAGTTGGAAATAGAGTAATCGCA

Fln Alignment:

AllPine_a_c55362___GNIVWGHVVSKDLINWHSLDPAIVPSEWYDIKGCWSGSATLLPGDKPVILYTGGTNSSQQVQNMAVPKNTSDPLLREWVKISQNPILIP--GNGIDGTSFRDPTTGWLGTDGKWRIVVGNRV
Q43089________________GNIVWAHSVSKDLVNWTPLDHAIHPSQPSDIKGCWSGSATILPGGKPAILYTGIDPNNHQVQNIAIPKNMSDPLLREWKKSPKNPLMEPTIANKINSSSFRDPTTSWLGKDGFWRVLIGSKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain