SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene119622

Length: 287 nt

UniGene Fasta

>sp_v3.0_unigene119622
ACTACAATGACACTGCCGTCGTCACTAGATTTAGTACAGCACTGCGAAGCCTAAATTGCAAAGACTTCCCAGTGGACGTTCCACGTAGCATAGATGATAGCCTCATCGCCACAGTTGGGCTGGGATTACTTCCATGTGAAGCTGGAAACACCTGTCAAGGCCCCAACGGAACAAGGCTCAGTGCAAGCATGAACAACATGTCCTTTGTATTGCCCAGCGTGGCCATACTGCAAGCTTATTATTTCGCTATTAATGGTGTGTTTATGAGGAATTTTCCATCAAAACCT

Ace file of the UniGene sp_v3.0_unigene119622

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laccase-like multicopper oxidase 130 (Fragment) n=1 Tax=Ginkgo biloba RepID=Q693D1_GINBI	-	-	7.0e-26	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Laccase	-	-	6.57e-34	-

Source	ECs	Term	Type	e value	Identity
Sma3	Laccase.	EC:1.10.3.2	-	0.0	-
Sma3	L-ascorbate oxidase.	EC:1.10.3.3	-	2.344e-20	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		2.344e-20	%
Sma3	Metabolic pathways	01100		2.344e-20	%

Source	Gene names
Sma3	At2g30210; At2g40370; At5g05390; GLac1; GLac90; GSVIVT00001780001; GSVIVT00006372001; GSVIVT00006373001; GSVIVT00006374001; GSVIVT00006383001; GSVIVT00018427001; GSVIVT00018428001; GSVIVT00018452001; GSVIVT00018453001; GSVIVT00018454001; GSVIVT00021338001

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G40370.1	LAC5 laccase 5 chr2:16858192-16860593 REVERSE LENGTH=580	7.0e-24	52%
RefSeq	Arabidopsis thaliana	NP_181568.1	laccase 5 [Arabidopsis thaliana]	9.0e-24	52%
RefSeq	Populus trichocarpa	XP_002317505.1	predicted protein [Populus trichocarpa]	4.0e-27	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRA7

Fln msg: Distance to subject end: 147 aas, your sequence is shorter than subject: 95 - 570

Fln protein: YNDTAVVTRFSTALRSLNCKDFPVDVPRSIDDSLIATVGLGLLPCEAGNTCQGPNGTRLSASMNNMSFVLPSVAILQAYYFAINGVFMRNFPSKP

Protein Length: 96

Fln nts: ACTACAATGACACTGCCGTCGTCACTAGATTTAGTACAGCACTGCGAAGCCTAAATTGCAAAGACTTCCCAGTGGACGTTCCACGTAGCATAGATGATAGCCTCATCGCCACAGTTGGGCTGGGATTACTTCCATGTGAAGCTGGAAACACCTGTCAAGGCCCCAACGGAACAAGGCTCAGTGCAAGCATGAACAACATGTCCTTTGTATTGCCCAGCGTGGCCATACTGCAAGCTTATTATTTCGCTATTAATGGTGTGTTTATGAGGAATTTTCCATCAAAACCT

Fln Alignment:

AllPine_a_c55156___YNDTAVVTRFSTALRSLNCKDFPVDVPRSIDDSLIATVGLGLLPCEAGNTCQGPNGTRLSASMNNMSFVLPSVAILQAYYFAINGVFMRNFPSKP
C0PRA7________________YNDTPVVTKFSKALRSLASPEHPVEVPQTVHKSFISTVGLGLLPCETGNTCEGPNGTRLSASMNNVSFVDPTIAILQANYFGINGVFSTDFPSKP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain