SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene119187

Length: 273 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene119187
GCCCTTCAGGTGTTGCAGTGAGACAAGTTGGTTGCCATGTTGAGACACAACAACGGGAAGACAGAACTACTATGATCTCTGGCAGGAAAAGAGCTAGGATCAAAACTCGTCCTAGTGCTGCAAAACTCACTGGCATCCCGGAATGGCTATGTATTCCAGGAACGCCTTTTCGAGTGGATGCATTTCGTTATCTAAGAGGAGATTGCTCTCATTGGTTCTTGTCTCATTTTCACACAGATCATTATCAAGGACTTACCAGAGGTTTCCGTCATG

Ace file of the UniGene sp_v3.0_unigene119187 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing	-	-	0.0001	47%
FL-Next	sp=DNA cross-link repair protein SNM1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%

Source	Gene names
Sma3	At2g45700; GSVIVT00032307001; PHYPADRAFT_135525; RCOM_0707890;

Source	InterPros	Term	Type	Identity
Sma3	Sterile alpha motif domain	IPR001660	-	-
Sma3	DNA repair metallo-beta-lactamase	IPR011084	-	-
Sma3	Sterile alpha motif/pointed domain	IPR013761	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G45700.1	sterile alpha motif (SAM) domain-containing protein chr2:18827216-18830505 REVERSE LENGTH=723	7.0e-22	60%
RefSeq	Arabidopsis thaliana	NP_182094.1	sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]	9.0e-22	60%
RefSeq	Populus trichocarpa	XP_002309453.1	predicted protein [Populus trichocarpa]	7.0e-25	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q38961

Fln msg: Distance to subject end: 293 aas, your sequence is shorter than subject: 90 - 484

Fln protein: PSGVAVRQVGCHVETQQREDRTTMISGRKRARIKTRPSAAKLTGIPEWLCIPGTPFRVDAFRYLRGDCSHWFLSHFHTDHYQGLTRGFRH

Protein Length: 91

Fln nts: GCCCTTCAGGTGTTGCAGTGAGACAAGTTGGTTGCCATGTTGAGACACAACAACGGGAAGACAGAACTACTATGATCTCTGGCAGGAAAAGAGCTAGGATCAAAACTCGTCCTAGTGCTGCAAAACTCACTGGCATCCCGGAATGGCTATGTATTCCAGGAACGCCTTTTCGAGTGGATGCATTTCGTTATCTAAGAGGAGATTGCTCTCATTGGTTCTTGTCTCATTTTCACACAGATCATTATCAAGGACTTACCAGAGGTTTCCGTCATG

Fln Alignment:

AllPine_a_c54606___PEWLCIPGTPFRVDAFRY--LRGDCSHWFLSHFHTDHYQGLTRGFRH
Q38961________________PFYKKLPGTPFTVDAFRYGCVQG-CSAYFLTHFHADHYIGLTKAWSH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain