SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene119126

Length: 504 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene119126
CGAGTGGCATGCCTGGAGGTATGCCTGGCAGCAGGCCAAGCACAGGCCGACACTCGCCACGACGCTCTTCTCATTCCTCACAACCGAGCGAAGTTTTGAAGCCCCTGCCAATTTCACTGGAGGATCTCTATCAAGGCACGACCAAGCGCATGAAGGTTTCGCGGAAGACGGTGACCGGTGAGACAGAGGATAAGGTTCTGGAGATTAACGTTCTCCCTGGTTGGAAATCCGGAACCAAAGTCCGTTTCCCTCGAGCGGGGGGCGAACACCCTACGGGAGAATCACAGGATCTCGTCTTCGTCGTTGAAGAAAAGCCACACCCGAGGTTTACGCGAGACGGGAATGACCTCACCGTTACCCAAAAGTTGTCACTCGTCGAAGCGCTGACGGGAGAAGGAGGGAGGAAAACGGTGGAGCATCTGGACGGGCGGAAGCTACAAGTGCAAATCCCACTAGGAGTGGTCAAACCTGGGCAACAGACGAGGGTATCCGGTGAAGGCATGC

Ace file of the UniGene sp_v3.0_unigene119126 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DnaJ protein [Coprinopsis cinerea okayama7#130] gb\|EAU83184.1\| DnaJ protein [Coprinopsis cinerea okayama7#130]	-	-	1.00053e-42	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Protein SIS1, putative	-	-	1.164e-11	-

Source	Gene names
Sma3	AT2G20550; AT4g28480; At2g20550; At2g20560; At3g08910; At3g47940; At4g28480; At5g01390; At5g01390/T10O8_100; CHLREDRAFT_96566; CPIP1; CPIP2a; DNJ35; F20O9.160; GSVIVT00003050001; MtrDRAFT_AC158497g3v2; MtrDRAFT_AC158497g4v2; OJ1115_B06.16; OSJNBa0010K01.3

Source	GOs	Term	Type	Identity
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Chaperone DnaJ, C-terminal	IPR002939	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G20560.1	DNAJ heat shock family protein chr2:8848353-8849815 REVERSE LENGTH=337	2.0e-37	54%
RefSeq	Arabidopsis thaliana	NP_179646.1	DNAJ heat shock protein-like protein [Arabidopsis thaliana]	2.0e-37	54%
RefSeq	Populus trichocarpa	XP_002328036.1	predicted protein [Populus trichocarpa]	1.0e-36	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLM7

Fln msg: Distance to subject end: 38 aas, your sequence is shorter than subject: 167 - 336

Fln protein: SGMPGGMPGSRPSTGRHSPRRSSHSSQPSEVLKPLPISLEDLYQGTTKRMKVSRKTVTGETEDKVLEINVLPGWKSGTKVRFPRAGGEHPTGESQDLVFVVEEKPHPRFTRDGNDLTVTQKLSLVEALTGEGGRKTVEHLDGRKLQVQIPLGVVKPGQQTRVSGEGM

Protein Length: 168

Fln nts: CGAGTGGCATGCCTGGAGGTATGCCTGGCAGCAGGCCAAGCACAGGCCGACACTCGCCACGACGCTCTTCTCATTCCTCACAACCGAGCGAAGTTTTGAAGCCCCTGCCAATTTCACTGGAGGATCTCTATCAAGGCACGACCAAGCGCATGAAGGTTTCGCGGAAGACGGTGACCGGTGAGACAGAGGATAAGGTTCTGGAGATTAACGTTCTCCCTGGTTGGAAATCCGGAACCAAAGTCCGTTTCCCTCGAGCGGGGGGCGAACACCCTACGGGAGAATCACAGGATCTCGTCTTCGTCGTTGAAGAAAAGCCACACCCGAGGTTTACGCGAGACGGGAATGACCTCACCGTTACCCAAAAGTTGTCACTCGTCGAAGCGCTGACGGGAGAAGGAGGGAGGAAAACGGTGGAGCATCTGGACGGGCGGAAGCTACAAGTGCAAATCCCACTAGGAGTGGTCAAACCTGGGCAACAGACGAGGGTATCCGGTGAAGGCATGC

Fln Alignment:

AllPine_a_c54529___LPISLEDLYQGTTKRMKVSRKTVTGETE----DKVLEINVLPGWKSGTKVRFPRAGGEHPTGESQDLVFVVEEKPHPRFTRDGNDLTVTQKLSLVEALTGEGGRKTVEHLDGRKLQVQIPLGVVKPGQQTRVSGEGM
B8LLM7________________LPCSLEELYNGSTRKMKISRNIVDASGKSMSVEEILTIEVKPGWKKGTKITFPEKGNQQPNVVPADLVFVIDEKPHNVYKRDGNDLVVTQKISLVEALT--GGMVNLTTLDGRNLSIPI-TDIVNPGTEKVVPNEGM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain