SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene119124

Length: 205 nt

UniGene Fasta

>sp_v3.0_unigene119124
ACAAACGAAGGAGATACGATGCAAACCAATTACACAGTCAAGTGCAGAGTTTTGGCAAAATGACGCTCAAAAATTAAGACGAGAAATTGACGTGCTAGCCAATACTAACAGGAATTTAATGGGAGAGAACCTTTCATCATTAGATATGAAGGAACTCGACGAACTTGGAGTTCGACTTGGGAGAGCAATTCATCGTGTCCGATCC

Ace file of the UniGene sp_v3.0_unigene119124

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MADS-box transcription factor n=4 Tax=Spermatophyta RepID=Q8LKX2_9SPER	-	-	8.0e-11	52%
FL-Next	tr=MADS box protein; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	52%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G09960.3	STK, AGL11 K-box region and MADS-box transcription factor family protein chr4:6236713-6240494 REVERSE LENGTH=256	2.0e-12	45%
RefSeq	Arabidopsis thaliana	NP_849351.1	agamous-like MADS-box protein AGL11 [Arabidopsis thaliana]	2.0e-12	45%
RefSeq	Populus trichocarpa	XP_002317315.1	predicted protein [Populus trichocarpa]	6.0e-13	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9ZTW4

Fln msg: Distance to subject end: 82 aas, your sequence is shorter than subject: 68 - 222

Fln protein: QTKEIRCKPITQSSAEFWQNDAQKLRREIDVLANTNRNLMGENLSSLDMKELDELGVRLGRAIHRVRS

Protein Length: 69

Fln nts: ACAAACGAAGGAGATACGATGCAAACCAATTACACAGTCAAGTGCAGAGTTTTGGCAAAATGACGCTCAAAAATTAAGACGAGAAATTGACGTGCTAGCCAATACTAACAGGAATTTAATGGGAGAGAACCTTTCATCATTAGATATGAAGGAACTCGACGAACTTGGAGTTCGACTTGGGAGAGCAATTCATCGTGTCCGATCC

Fln Alignment:

AllPine_a_c54526___ITQSSAEFWQNDAQKLRREIDVLANTNRNLMGENLSSLDMKELDELGVRLGRAIHRVRS
Q9ZTW4________________ISESNSQYWQQEAGKLRQQIDILQNANRHLMGDGLTALNIKELKQLEVRLEKGISRVRS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain