SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene119044

Length: 395 nt

UniGene Fasta

>sp_v3.0_unigene119044
GGCAATACCATCAGTAGCAAGGGTCTTTCTGGTTTGTACCGTGGTTTCGTTCCATCTGTTGTTGGTATTGTTGTCTACCGTGGTCTTTACTTCGGAATGTACGACTCTCTCAAACCCGTCTTGCTCACTGGTCCTCTCGAAGGAAACTTCTTGGCTTCCTTCTTGTTGGGTTGGGCTGTTACAACTGGTTCCGGTTTGGCTTCTTATCCTTTGGACACTATCCGTCGTCGTATGATGATGACAAGTGGTGGTACTGGACCACATTACCGCAACATGATGCACGCTGGTCAAGCCATTATCGCCAAGGAAGGTGTCAAATCCCTCTTCAAGGGTGCAGGTGCCAACATCTTGCGTGGTATTGCCGGTGCCGGTGTGTTGTCCGGTTACGACAAATT

Ace file of the UniGene sp_v3.0_unigene119044

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	eukaryotic ADP/ATP carrier [Cryptococcus neoformans var. grubii]	-	-	0.0	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	ADP,ATP carrier protein	-	-	2.659e-25	-

Source	Gene names
Sma3	AAC; ABT; ANT; ANT-G1; ANT-G2; ANT1; ANT2; AT3G08580; AT4g28390; At3g08580; At4g28390; At4g28390/F20O9_60; At5g13490; At5g17400; CHLREDRAFT_196520; F20O9.60; GSVIVT00000009001; GSVIVT00018612001; GSVIVT00024630001; GSVIVT00028814001; LOC_Os02g48720; LOC_O

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	ATP:ADP antiporter activity	GO:0005471	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	purine nucleotide transport	GO:0015865	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G08580.1	AAC1 ADP/ATP carrier 1 chr3:2605706-2607030 REVERSE LENGTH=381	66%
RefSeq	Arabidopsis thaliana	NP_187470.1	ADP,ATP carrier protein 1 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002299948.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVC6

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 131 - 390

Fln protein: GNTISSKGLSGLYRGFVPSVVGIVVYRGLYFGMYDSLKPVLLTGPLEGNFLASFLLGWAVTTGSGLASYPLDTIRRRMMMTSGGTGPHYRNMMHAGQAIIAKEGVKSLFKGAGANILRGIAGAGVLSGYDK

Protein Length: 132

Fln nts: GGCAATACCATCAGTAGCAAGGGTCTTTCTGGTTTGTACCGTGGTTTCGTTCCATCTGTTGTTGGTATTGTTGTCTACCGTGGTCTTTACTTCGGAATGTACGACTCTCTCAAACCCGTCTTGCTCACTGGTCCTCTCGAAGGAAACTTCTTGGCTTCCTTCTTGTTGGGTTGGGCTGTTACAACTGGTTCCGGTTTGGCTTCTTATCCTTTGGACACTATCCGTCGTCGTATGATGATGACAAGTGGTGGTACTGGACCACATTACCGCAACATGATGCACGCTGGTCAAGCCATTATCGCCAAGGAAGGTGTCAAATCCCTCTTCAAGGGTGCAGGTGCCAACATCTTGCGTGGTATTGCCGGTGCCGGTGTGTTGTCCGGTTACGACAAATT

Fln Alignment:

AllPine_a_c54430___TISSKGLSGLYRGFVPSVVGIVVYRGLYFGMYDSLKPVLLTGPLEGNFLASFLLGWAVTTGSGLASYPLDTIRRRMMMTSGGTGPHYRNMMHAGQAIIAKEGVKSLFKGAGANILRGIAGAGVLSGYDK
A9NVC6________________TLKSDGVAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGDLQDNFLASFLLGWGITIGAGLASYPIDTVRRRMMMTS-GEAVKYKSSLDAFNQIVKNEGTKSLFKGAGANILRAIAGAGVLAGYDQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain