SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene119021

Length: 206 nt

UniGene Fasta

>sp_v3.0_unigene119021
TGAAATTTGACCCTACAGATCAGCAGCTTATCCAACACCTGCAAGGCAAGATTGGTGTAGAGAATTCCACTCCTCATCCTTTACTTGATCGTTTCATTACTACACTAGAAGGTGAAGATGGAATCTGCTACACACATCCAGAAAAGCTGCCAGGAGTATCTCGTGAAGGGTCTATAAAGCATTTCTTCCATCGACCTTCCAAGGCA

Ace file of the UniGene sp_v3.0_unigene119021

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	No apical meristem-like protein (Fragment) n=1 Tax=Picea sitchensis RepID=E0ZFA1_PICSI	-	-	4.0e-26	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	NAC domain protein, IPR003441	-	-	4.554e-20	-

Source	Gene names
Sma3	AT4g28500; At4g28500; At4g29230; At5g56620; F20O9.190; GSVIVT00003042001; GSVIVT00016636001; GSVIVT00018648001; GSVIVT00020648001; GSVIVT00030284001; MtrDRAFT_AC158497g28v2; NAC075; NAC105; NAC119; NAC150; NAC151; NAC153; NAC154; NAC155; NAC156; NAC157; O

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G29230.1	anac075, NAC075 NAC domain containing protein 75 chr4:14410338-14414956 FORWARD LENGTH=498	5.0e-30	69%
RefSeq	Arabidopsis thaliana	NP_194652.1	NAC domain containing protein 75 [Arabidopsis thaliana]	6.0e-30	69%
RefSeq	Populus trichocarpa	XP_002328031.1	NAC domain protein, IPR003441 [Populus trichocarpa]	8.0e-31	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLI0

Fln msg: Distance to subject end: 268 aas, your sequence is shorter than subject: 68 - 395

Fln protein: KFDPTDQQLIQHLQGKIGVENSTPHPLLDRFITTLEGEDGICYTHPEKLPGVSREGSIKHFFHRPSKA

Protein Length: 69

Fln nts: TGAAATTTGACCCTACAGATCAGCAGCTTATCCAACACCTGCAAGGCAAGATTGGTGTAGAGAATTCCACTCCTCATCCTTTACTTGATCGTTTCATTACTACACTAGAAGGTGAAGATGGAATCTGCTACACACATCCAGAAAAGCTGCCAGGAGTATCTCGTGAAGGGTCTATAAAGCATTTCTTCCATCGACCTTCCAAGGCA

Fln Alignment:

AllPine_a_c54398___KFDPTDQQLIQHLQGKIGVENSTPHPLLDRFITTLEGEDGICYTHPEKLPGVSREGSIKHFFHRPSKA
B8LLI0________________KFDPSEEQLLRHLAAKVGIGNARPHSLINDFILTLEEVDGICYTHPENLPGVKQDGSYSHFFHRTTKA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain