SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene118918

Length: 147 nt

UniGene Fasta

>sp_v3.0_unigene118918
CTTTGAAGCCCATGTTGCAGATTTTGGGCTAGCCAAGTTCCTGCAACATTCTGGCGCTTCCGAATACATGTCTTCGGTTGCAGGCACCTTTGGCTACATAGCACCAGAGTACGTGCACACTTTGAAAGTGGACGAGAAAAGCGATGT

Ace file of the UniGene sp_v3.0_unigene118918

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	receptor-like protein kinase 1 [Glycine max]	-	-	9.0e-16	83%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	61%
Sma3	Receptor protein kinase-like protein	-	-	5.783e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	1.892e-07	-

Source	Gene names
Sma3	AK15; AT1G75820; AT3G49670; AT4G20270; AT4G28490; AT4g20270; AT5G61480; AT5G65700; At1g75820; At3g49670; At4g20270; At4g28490; At5g61480; At5g65700; CLAVATA1; CLL1A; CLL1B; CLV1; CLV1A; CLV1B; CM0216.560.nc; F1C12.190; F21O9.180; F6H11.170; FON1; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	microsporocyte differentiation	GO:0010480	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-
Sma3	gametophyte development	GO:0048229	Biological Process	-
Sma3	floral organ development	GO:0048437	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G49670.1	BAM2 Leucine-rich receptor-like protein kinase family protein chr3:18417741-18420836 FORWARD LENGTH=1002	3.0e-20	81%
RefSeq	Arabidopsis thaliana	NP_190536.1	receptor-like kinase BAM2 [Arabidopsis thaliana]	3.0e-20	81%
RefSeq	Populus trichocarpa	XP_002300697.1	predicted protein [Populus trichocarpa]	9.0e-21	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Distance to subject end: 116 aas, your sequence is shorter than subject: 48 - 998

Fln protein: FEAHVADFGLAKFLQHSGASEYMSSVAGTFGYIAPEYVHTLKVDEKSD

Protein Length: 49

Fln nts: CTTTGAAGCCCATGTTGCAGATTTTGGGCTAGCCAAGTTCCTGCAACATTCTGGCGCTTCCGAATACATGTCTTCGGTTGCAGGCACCTTTGGCTACATAGCACCAGAGTACGTGCACACTTTGAAAGTGGACGAGAAAAGCGATGT

Fln Alignment:

AllPine_a_c54276___FEAHVADFGLAKFLQHSG-ASEYMSSVAGTFGYIAPEYVHTLKVDEKSD
Q19AV8________________YVAHVADFGVAKILQSCARGADSMSAIAGSYGYIAPEYAYTLKVNEKSD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain