SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene118750

Length: 1194 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene118750

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA reductase 1 n=1 Tax=Gossypium hirsutum RepID=Q0VH88_GOSHI	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G67730.1	YBR159, KCR1, ATKCR1 beta-ketoacyl reductase 1 chr1:25391676-25393365 FORWARD LENGTH=318	60%
RefSeq	Arabidopsis thaliana	NP_564905.1	beta-ketoacyl reductase 1 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002314573.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS27

Fln msg: Distance to subject end: 46 aas, your sequence is shorter than subject: 279 - 324

Fln protein: METSNPLLLFLNQAGPERMILLFVGALGLLTILNTSSRFLKWIWVTFLRPGKNLSKYGSWAIVTGPTDGIGRSFAIQLARRKINLVLVGRSPSKLKDLADDLQAKYKTQVKTIVVDFTGDLIEGMNRVEEAINDLDVGILINNVGMSYPYARFFHEVDSQLLKNLIAVNIEGTTRMVHSVLPGMLKRKKGAIVNIGSGAATVIPSDPLYTVYAATKAYVDQFSRSLYVEYKHSGVDVQCQVPLYVATKMASIKKASLLVPSADTYARAALRWVKGSEPR

Protein Length: 280

Fln nts: TCTGGGTCTCTGAATCTGCCCTTCCACTTTTCTTCTCATCGTTAAAACCATAGGAATCGGGTTCGCGTATTAGCTTTCAGGCTGTAATGGATTTGTGTATTACCTATTATTCCCTGTTGGGCTTTTGAATCCGAATAAGATGCAAAGTAGTACCCTGAAAAAATTGTGATTTTACAATTTAAACTAAGCACAGTCGCCCAGATTTCAGGCTGTAGTGTTAGCTTTACTCATGTTTAATTAATTACCTGTTTTGTTTCTTTGCTTTTCAAGGTAGTTATGGTGTTTGTTGGATGTGTGAATCTCTCAGGGATCCTCAGATTCAGCACATAACGTAAAGTGAGGGGATTGGTATTATT_-_ATGGAAACATCAAATCCGTTGTTATTGTTCCTGAATCAAGCAGGGCCAGAGAGGATGATTCTCCTCTTTGTCGGAGCCCTTGGTCTACTTACCATTCTCAACACTTCGAGTCGATTCCTAAAATGGATTTGGGTGACCTTTCTTCGACCTGGGAAGAATCTCAGCAAGTATGGTTCATGGGCAATAGTGACAGGCCCCACGGATGGGATTGGAAGGTCATTTGCCATTCAGTTAGCTCGTCGCAAGATCAATTTGGTCTTGGTTGGAAGAAGTCCTTCCAAGCTCAAAGACCTTGCAGATGACTTGCAGGCCAAATACAAAACCCAAGTCAAAACTATTGTGGTGGATTTCACTGGAGATCTTATAGAAGGCATGAACAGAGTAGAGGAGGCCATTAATGACTTGGATGTTGGAATTCTGATAAACAATGTTGGGATGTCCTACCCGTATGCCAGGTTCTTTCATGAAGTTGATTCTCAGCTTCTCAAAAACCTCATAGCAGTGAATATAGAGGGTACTACTAGAATGGTCCACTCTGTGCTCCCTGGAATGTTGAAAAGGAAGAAGGGTGCTATCGTGAACATTGGCTCTGGCGCTGCTACAGTTATTCCTTCTGATCCTCTCTACACTGTCTATGCTGCCACCAAAGCGTATGTGGACCAGTTTTCAAGGTCACTTTATGTGGAATACAAGCACAGTGGAGTTGATGTGCAGTGCCAGGTTCCCTTGTATGTAGCTACTAAAATGGCCTCCATCAAGAAAGCTTCCTTACTTGTACCTTCTGCTGATACTTATGCACGTGCTGCCTTAAGGTGGGTTAAAGGTTCTGAGCCAAGAT

Fln Alignment:

AllPine_a_c54069___METSNPLLLFLNQAGPERMILLFVGALGLLTILNTSSRFLKWIWVTFLRPGKNLSKYGSWAIVTGPTDGIGRSFAIQLARRKINLVLVGRSPSKLKDLADDLQAKYKTQVKTIVVDFTGDLIEGMNRVEEAINDLDVGILINNVGMSYPYARFFHEVDSQLLKNLIAVNIEGTTRMVHSVLPGMLKRKKGAIVNIGSGAATVIPSDPLYTVYAATKAYVDQFSRSLYVEYKHSGVDVQCQVPLYVATKMASIKKASLLVPSADTYARAALRWVKGSEPR
B8LS27________________METSNPLLLFLNQAGPERMILLFVGALGLLTILNTSSGLLKWIWVTFLRPGKNLSKYGSWAIVTGPTDGIGRSFAIQLARRKINLVLVGRSPSKLTDLADELQAKYKTQVKTVVVDFTGDLIEGISRVEETINDLDVGILINNVGMSYPYARFFHEVDSQLLKNLIAVNIEGTTRMVHTVLPGMLKRKKGAIVNIGSGAATVIPSDPLYTVYAATKAYVDQFSRSLYVEYKHSGVDVQCQVPLYVATKMASIKKASLLVPSADTYARAALRCV-GYEPR

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
163	60			40	1.0
505	80		20		0.995493
929		11	88		0.923564
930		88		11	0.923564
974		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain