SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene118679

Length: 220 nt

UniGene Fasta

>sp_v3.0_unigene118679
ACGCTTCGAAAGACAAGGCCATTAATTTGTCCGAACGCCCGGTCTTCATCAAAGCACTATTATCCAAAAGTGCTGAATCAATTGTTGAAGCTGTCCTCCGAAGGGATCCATTTGAAGGTGAATTTATTCAGGCAGTTCAAGAAATTGTCCACTCTTTGGAACCAGTGTTGTCCAGGCAGCCCAATTTGTCAATATCCTGGAGCGCCTTTTAGAACCTGAG

Ace file of the UniGene sp_v3.0_unigene118679

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glutamate dehydrogenase (NADP+) [Arabidopsis thaliana] gb\|AEE32707.1\| glutamate dehydrogenase (NADP+) [Arabidopsis thaliana]	-	-	3.0e-11	53%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	77%

Source	Gene names
Sma3	B1064G04.5; B1144D11.27; Os01g0558200; OsJ_02218; RCOM_1485390; VITISV_043645;

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	cellular amino acid metabolic process	GO:0006520	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase	IPR006095	-	-
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal	IPR006096	-	-
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain	IPR006097	-	-
Sma3	Zinc finger, TTF-type	IPR006580	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G51720.1	Amino acid dehydrogenase family protein chr1:19181741-19186297 FORWARD LENGTH=637	2.0e-13	53%
RefSeq	Arabidopsis thaliana	NP_175583.2	glutamate dehydrogenase (NADP+) [Arabidopsis thaliana]	3.0e-13	53%
RefSeq	Populus trichocarpa	XP_002329025.1	predicted protein [Populus trichocarpa]	1.0e-13	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8RY88

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 395 aas, your sequence is shorter than subject: 70 - 604

Fln protein: ASKDKAINLSERPVFIKALLSKSAESIVEAVLRRDPFEGEFIQAVQEIVHSLEPVLSRQPNLSISWSAF*

Protein Length: 71

Fln nts: ACGCTTCGAAAGACAAGGCCATTAATTTGTCCGAACGCCCGGTCTTCATCAAAGCACTATTATCCAAAAGTGCTGAATCAATTGTTGAAGCTGTCCTCCGAAGGGATCCATTTGAAGGTGAATTTATTCAGGCAGTTCAAGAAATTGTCCACTCTTTGGAACCAGTGTTGTCCAGGCAGCCCAATTTGTCAATATCCTGGAGCGCCTTTTAGAACCTGAG

Fln Alignment:

AllPine_a_c53987___ASKDKAINLSERPVFIKALLSKSAESIVEAVLRRDPFEGEFIQAVQEIVHSLEPVLSR
D8RY88________________ASKDRGITLLERPIYIKALLSKSAESIIETVIRRDPHESEYIQAVQEIVHSLEPVLSK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain