SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene118670

Length: 335 nt

UniGene Fasta

>sp_v3.0_unigene118670
ACAGAGAAAGGACCCTTGATGAGATGTTCGTTCGAGGAAACTGTGGATATTCTGATGGACGCTGCAGCCTATGCCGAGGGCGATGCTCTCCGGGGTGTTTCCGAGAACATCCTGGTCGGGCGCTTGGCACCCGTTGGGACAGGCAACTGTTCCTTGCTTGTGAATTCCAACTTGTTGGAAATGCCGTCGAAATTCTAGCACCCAGCTACATGGATTCAGATAACTTCACCATTACTGGAGCATCTGCGTCTCCTATGTCGTCTCCATATCTTGGTCTTATCATGTCCCCTGATGCCCGAAGGTCCCCTTACGCAGGTGCACAATTCTCTCCTTAT

Ace file of the UniGene sp_v3.0_unigene118670

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase n=6 Tax=core eudicotyledons RepID=B9SXC0_RICCO	-	-	3.0e-24	67%
FL-Next	sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	69%
Sma3	DNA-directed RNA polymerase	-	-	4.865e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA-directed RNA polymerase.	EC:2.7.7.6	-	8.782e-16	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	8.782e-16	%
Sma3	Pyrimidine metabolism	00240	8.782e-16	%
Sma3	Metabolic pathways	01100	8.782e-16	%

Source	Gene names
Sma3	At4g35800; F4B14.70; GSVIVT00015507001; MICPUCDRAFT_45178; OSTLU_26100; Os05g0151000; OsI_27866; OsJ_17146; OsJ_26081; OsJ_26085; P0001A07.9; PHATRDRAFT_15555; PHYPADRAFT_101222; PHYPADRAFT_93853; RCOM_0782880; RPB1; RPB1-B1 or gene B1; RPB1-B2; RPB1-C; R

Source	GOs	Term	Type	Identity
Sma3	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transcription from RNA polymerase II promoter	GO:0006366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	RNA polymerase, alpha subunit	IPR000722	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	RNA polymerase, N-terminal	IPR006592	-	-
Sma3	RNA polymerase Rpb1, domain 3	IPR007066	-	-
Sma3	RNA polymerase Rpb1, domain 7	IPR007073	-	-
Sma3	RNA polymerase Rpb1, domain 6	IPR007075	-	-
Sma3	RNA polymerase Rpb1, domain 1	IPR007080	-	-
Sma3	RNA polymerase Rpb1, domain 5	IPR007081	-	-
Sma3	RNA polymerase Rpb1, domain 4	IPR007083	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G35800.1	NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS RNA polymerase II large subunit chr4:16961115-16967892 REVERSE LENGTH=1839	5.0e-22	69%
RefSeq	Arabidopsis thaliana	NP_195305.2	DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]	7.0e-22	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P18616

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 315 aas, your sequence is shorter than subject: 66 - 1839

Fln protein: TEKGPLMRCSFEETVDILMDAAAYAEGDALRGVSENILVGRLAPVGTGNCSLLVNSNLLEMPSKF*

Protein Length: 67

Fln nts: ACAGAGAAAGGACCCTTGATGAGATGTTCGTTCGAGGAAACTGTGGATATTCTGATGGACGCTGCAGCCTATGCCGAGGGCGATGCTCTCCGGGGTGTTTCCGAGAACATCCTGGTCGGGCGCTTGGCACCCGTTGGGACAGGCAACTGTTCCTTGCTTGTGAATTCCAACTTGTTGGAAATGCCGTCGAAATTCTAGCACCCAGCTACATGGATTCAGATAACTTCACCATTACTGGAGCATCTGCGTCTCCTATGTCGTCTCCATATCTTGGTCTTATCATGTCCCCTGATGCCCGAAGGTCCCCTTACGCAGGTGCACAATTCTCTCCTTAT

Fln Alignment:

AllPine_a_c53975___EKGPLMRCSFEETVDILMDAAAYAEGDALRGVSENILVGRLAPVGTGNCSLLVNSNLLE
P18616________________DTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain