SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene118353

Length: 465 nt

UniGene Fasta

>sp_v3.0_unigene118353
GCGTTATCAATGCTGCAATGAACAATGACCTATTCTTCGCAGTGGCGAATCATTCAATGACCGTTGTAGCTGTGGATGCTTTGTATACAAAGCCTGTTCAGACCAATTTTCTGATGCTCGGCCCTGGGCAGACTACAGACGTACTTGTTACTGCTGATCAGTGTATAGGCAGTTATTACATGGCTGCGCGTGCATATTCCAGTGGGCAAGGAGTTGCCTTCGATAACACCACAACCACTGCCATTTTGGAATACGTTGGAGTTAACTCCACTTCCTCATCTCCACAGATGCCCGTATTTACCGTTCTTTAACGACACTAATCTATGACACAGTTCAACGCGGCTCTGAGAAGCTTGGCCTCGCCCCAGCACCCAGTCTCTGTCCCTCACACGGTTGAAGAGAATCTTCTCTACACTGTGGGAATTGGGTTGTTTAATGGAACAAGATTGGCAGCAAGTATGAATA

Ace file of the UniGene sp_v3.0_unigene118353

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laccase n=2 Tax=Pinus taeda RepID=Q9AUI3_PINTA	-	-	0.0	64%
FL-Next	tr=Laccase; Pinus taeda (Loblolly pine).	-	-	0.0	64%
Sma3	Laccase	-	-	1.115e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Laccase.	EC:1.10.3.2	-	0.0	-
Sma3	L-ascorbate oxidase.	EC:1.10.3.3	-	1.077e-10	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		1.077e-10	%
Sma3	Metabolic pathways	01100		1.077e-10	%

Source	Gene names
Sma3	At2g30210; At2g40370; At5g03260; At5g05390; At5g07130; At5g58910; B1088C09.5; F15A17_290; GLac90; GSVIVT00001781001; GSVIVT00006372001; GSVIVT00006373001; GSVIVT00006374001; GSVIVT00006383001; GSVIVT00008748001; GSVIVT00010248001; GSVIVT00010254001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G05390.1	LAC12 laccase 12 chr5:1594753-1597042 FORWARD LENGTH=565	1.00053e-42	51%
RefSeq	Arabidopsis thaliana	NP_196158.1	laccase 12 [Arabidopsis thaliana]	1.99965e-42	51%
RefSeq	Populus trichocarpa	XP_002308196.1	laccase 110a [Populus trichocarpa]	3.99931e-42	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9AUI3

Fln msg: Distance to subject end: 179 aas, your sequence is shorter than subject: 154 - 570

Fln protein: VINAAMNNDLFFAVANHSMTVVAVDALYTKPVQTNFLMLGPGQTTDVLVTADQCIGSYYMAARAYSSGQGVAFDNTTTTAILEYVGVNSTSSSPQMPVFTVL*RH*SMTQFNAALRSLASPQHPVSVPHTVEENLLYTVGIGLFNGTRLAASMN

Protein Length: 155

Fln nts: GCGTTATCAATGCTGCAATGAACAATGACCTATTCTTCGCAGTGGCGAATCATTCAATGACCGTTGTAGCTGTGGATGCTTTGTATACAAAGCCTGTTCAGACCAATTTTCTGATGCTCGGCCCTGGGCAGACTACAGACGTACTTGTTACTGCTGATCAGTGTATAGGCAGTTATTACATGGCTGCGCGTGCATATTCCAGTGGGCAAGGAGTTGCCTTCGATAACACCACAACCACTGCCATTTTGGAATACGTTGGAGTTAACTCCACTTCCTCATCTCCACAGATGCCCGTATTTACCGTTCTTTAACGACACTAATCTATGACACAGTTCAACGCGGCTCTGAGAAGCTTGGCCTCGCCCCAGCACCCAGTCTCTGTCCCTCACACGGTTGAAGAGAATCTTCTCTACACTGTGGGAATTGGGTTGTTTAATGGAACAAGATTGGCAGCAAGTATGAATA

Fln Alignment:

AllPine_a_c53578___VINAAMNNDLFFAVANHSMTVVAVDALYTKPVQTNFLMLGPGQTTDVLVTADQCIGSYYMAARAYSSGQGVAFDNTTTTAILEYVGVNSTSSSPQMPVFTVL*RH*SMTQFNAALRSLASPQHPVSVPHTVEENLLYTVGIGLF----------NGTRLAASMN
Q9AUI3________________VINAALNTDLFFTVGGHTMTVVAVDALYTKPFQTNLLMLGPGQTTDVLVTADQTTGRYYMAARAYSSGQGVPFDNTTTVAILEYKGSSSSTSVPTVPNLPAYNDTQTATRFANALRSLASHDHPVFVPQSVDQNLFYTIGLGLINCPGQSCGGPNGSRFAASMN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain