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UniGene Name: sp_v3.0_unigene118324
Length: 212 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
 UniGene Fasta (sense)
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| >sp_v3.0_unigene118324
G |
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Ace file of the UniGene sp_v3.0_unigene118324 (antisense)
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | GlimmerM protein 276 n=1 Tax=Beta vulgaris RepID=Q20CC6_BETVU | - | - | 3.0e-24 | 77% |
| FL-Next | sp=Serine/threonine-protein kinase ATR; Oryza sativa subsp. japonica (Rice). | - | - | 0.0 | 75% |
| Sma3 | Serine/threonine-protein kinase ATR | - | - | 1.251e-08 | - |
| Source | ECs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Non-specific serine/threonine protein kinase. | EC:2.7.11.1 | - | 1.598e-06 | - |
| Source | Gene names |
|---|---|
| Sma3 | ATR; At5g40820; GSVIVT00036181001; LOC_Os06g50910; MHK7.5; Os06g0724700; OsI_023634; OsI_24505; OsJ_22700; P0535F09.39; P0548E04.6; PHYPADRAFT_129584; POPTRDRAFT_790118; POPTRDRAFT_818220; RAD3; RCOM_0975960; |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
| Sma3 | chromosome | GO:0005694 | Cellular Component | 0.0 | - |
| Sma3 | protein serine/threonine kinase activity | GO:0004674 | Molecular Function | 0.0 | - |
| Sma3 | binding | GO:0005488 | Molecular Function | 0.0 | - |
| Sma3 | DNA repair | GO:0006281 | Biological Process | 0.0 | - |
| Sma3 | telomere maintenance via telomerase | GO:0007004 | Biological Process | 0.0 | - |
| Sma3 | cell cycle | GO:0007049 | Biological Process | 0.0 | - |
| Sma3 | meiosis | GO:0007126 | Biological Process | 0.0 | - |
| Sma3 | response to aluminum ion | GO:0010044 | Biological Process | 0.0 | - |
| Sma3 | response to gamma radiation | GO:0010332 | Biological Process | 0.0 | - |
| Sma3 | regulation of telomere maintenance | GO:0032204 | Biological Process | 0.0 | - |
| Sma3 | multicellular organism reproduction | GO:0032504 | Biological Process | 0.0 | - |
| Sma3 | telomere maintenance in response to DNA damage | GO:0043247 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Phosphatidylinositol 3-/4-kinase, catalytic domain | IPR000403 | - | 0.0 | - |
| Sma3 | PIK-related kinase, FAT | IPR003151 | - | 0.0 | - |
| Sma3 | PIK-related kinase, FATC | IPR003152 | - | 0.0 | - |
| Sma3 | Tetratricopeptide-like helical | IPR011990 | - | 0.0 | - |
| Sma3 | UME | IPR012993 | - | 0.0 | - |
| Sma3 | PIK-related kinase | IPR014009 | - | 0.0 | - |
| Sma3 | Phosphatidylinositol 3/4-kinase, conserved site | IPR018936 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT5G40820.1 | ATRAD3, ATR, ATATR Ataxia telangiectasia-mutated and RAD3-related chr5:16343860-16353847 REVERSE LENGTH=2702 | 2.0e-23 | 67% |
| RefSeq | Arabidopsis thaliana | NP_198898.2 | serine/threonine-protein kinase ATR [Arabidopsis thaliana] | 3.0e-23 | 67% |
| RefSeq | Populus trichocarpa | XP_002334053.1 | predicted protein [Populus trichocarpa] | 1.0e-28 | 75% |
| Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: sp_plants
Fln subject: Q5Z987
Fln msg: Distance to subject end: 974 aas, your sequence is shorter than subject: 70 - 2710
Fln protein:
T
Protein Length:
71
Fln nts:
G
Fln Alignment:
AllPine_a_c53542___THVRGKSGSFNPAAGVSGAFADEDVSFLMEIYSGLDEPDGLFGLARLRRSANLQDQILINEKAGNWAEAL
Q5Z987________________SHVREKSGSSNPAADCSGAFSDDDISFLMEIYGGLDEPDGLLGLANLRKSSTLQDQLIINEKAGNWAEVL
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
