SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene118051

Length: 328 nt

UniGene Fasta

>sp_v3.0_unigene118051
CAGGATTTTTCTATACCGGCGATGGCGCAGCCCGTGATGAGCACGGATACATTTGGATCAAGGGTCGCGTAGACGATGTCATCAACGTCTCGGGACACCGCCTCTCCACTGCCGAGATCGAGTCTGCCTTGATCCTTCACAGGGGCGTCGCTGAGACTGCCGTCATCGGCGTCTCCGACGATCTCACTGGCCAAACCGTCTATGCCTTTGTGACCCTCAAGCCCGAATTCACCTACAACCCCAATGACGAGGGTTCCCTTGCTAAGGAGCTCATTCTTCAGGTCAGGAAGGTCAGTCGGGCCATTCGCCGCGCCAAAGAGATCATCAT

Ace file of the UniGene sp_v3.0_unigene118051

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acetate--CoA ligase n=1 Tax=Schizophyllum commune H4-8 RepID=D8Q886_SCHCM	-	-	1.00053e-42	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Sma3	Acetyl CoA synthetase	-	-	1.264e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acetate--CoA ligase.	EC:6.2.1.1	-	2.874e-26	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	2.874e-26	%
Sma3	Pyruvate metabolism	00620	2.874e-26	%
Sma3	Propanoate metabolism	00640	2.874e-26	%
Sma3	Methane metabolism	00680	2.874e-26	%
Sma3	Carbon fixation pathways in prokaryotes	00720	2.874e-26	%
Sma3	Metabolic pathways	01100	2.874e-26	%
Sma3	Biosynthesis of secondary metabolites	01110	2.874e-26	%

Source	Gene names
Sma3	ACAS2; ACS; ACS1; ACS2; ACS3; At5g36880; CHLREDRAFT_139750; CHLREDRAFT_194063; CHLREDRAFT_196311; GSVIVT00038001001; H0502B11.5; MICPUN_104547; OSJNBb0118P14.12; OSTLU_44757; Os02g0525900; OsI_07465; OsI_15767; OsJ_06966; OsJ_14684; Ot02g04430; P0415B12.4

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	acetate-CoA ligase activity	GO:0003987	Molecular Function	-
Sma3	AMP binding	GO:0016208	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Acetate-CoA ligase	IPR011904	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G36880.2	ACS acetyl-CoA synthetase chr5:14534961-14540296 REVERSE LENGTH=743	6.0e-28	53%
RefSeq	Arabidopsis thaliana	NP_198504.1	acetyl-CoA synthetase [Arabidopsis thaliana]	6.0e-28	53%
RefSeq	Populus trichocarpa	XP_002320403.1	predicted protein [Populus trichocarpa]	6.0e-28	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL75

Fln msg: Distance to subject end: 32 aas, your sequence is shorter than subject: 108 - 582

Fln protein: GFFYTGDGAARDEHGYIWIKGRVDDVINVSGHRLSTAEIESALILHRGVAETAVIGVSDDLTGQTVYAFVTLKPEFTYNPNDEGSLAKELILQVRKVSRAIRRAKEII

Protein Length: 109

Fln nts: CAGGATTTTTCTATACCGGCGATGGCGCAGCCCGTGATGAGCACGGATACATTTGGATCAAGGGTCGCGTAGACGATGTCATCAACGTCTCGGGACACCGCCTCTCCACTGCCGAGATCGAGTCTGCCTTGATCCTTCACAGGGGCGTCGCTGAGACTGCCGTCATCGGCGTCTCCGACGATCTCACTGGCCAAACCGTCTATGCCTTTGTGACCCTCAAGCCCGAATTCACCTACAACCCCAATGACGAGGGTTCCCTTGCTAAGGAGCTCATTCTTCAGGTCAGGAAGGTCAGTCGGGCCATTCGCCGCGCCAAAGAGATCATCAT

Fln Alignment:

AllPine_a_c53190___GFFYTGDGAARDEHGYIWIKGRVD-DVINVSGHRLSTAEIESALILHRGVAETAVIGVSDDLTGQTVYAFVTLKPEFTYNPNDEGSLA
B8LL75________________GYFRTGDSVMMDEDGFFVILGRTSVDILKVGGYKLSALEIEATLLEHPNISECAVLGLPDEDYGEAICAVTVLGPEATTREADESKPA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain