SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene117711

Length: 332 nt

UniGene Fasta

>sp_v3.0_unigene117711
CGTCGTGACCTTAGCTGTCACTCATATTTTCTGGTCTTGGTGTTGCTGTGGTTGCTTTGTATCGTATTGGAATAAATTTAAAATGCGTTGTGGCCGTGGAAACATGTCGAAAGAACAGGTTTATTCTTAGGAGTTGGTGGAGGAAAACAGGCCAAACTGGTAGACTGATCGAGAAGGAAGAGGTTCAACATTTGACCAGAGATGTACTGGAGGAGCTAATAGATACAGTAGGAGGTTTTGATCTTGTCATCGGTGGAAGCCCATGTAATAACCTATCTGGTAACAACAGATTTACCAGAGATGGACTAGAAGGGAAACATTCCGCTGTTTTC

Ace file of the UniGene sp_v3.0_unigene117711

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DRM-type DNA-methyltransferase n=1 Tax=Elaeis guineensis RepID=B4XTT0_ELAGV	-	-	3.0e-32	65%
FL-Next	sp=DNA (cytosine-5)-methyltransferase DRM2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Sma3	DNA methyltransferase	-	-	2.793e-10	-

Source	Gene names
Sma3	At5g14620; DMT905; DMT908; DRM2; DRM5; F8M21_270; GSVIVT00020712001; LOC_Os03g02010; LOC_Os11g01810; NtDRM1; OSJNBb0043C10.1; Os03g0110800; Os11g0109200; OsI_09692; OsI_27322; OsI_34820; OsJ_09131; OsJ_32669; PHYPADRAFT_148057; POPTRDRAFT_591765; POPTRDRA

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA (cytosine-5-)-methyltransferase activity	GO:0003886	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	DNA methylation	GO:0006306	Biological Process	-
Sma3	methylation-dependent chromatin silencing	GO:0006346	Biological Process	-
Sma3	histone H3-K9 methylation	GO:0051567	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Stress responsive alpha-beta barrel	IPR013097	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G14620.1	DRM2, DMT7 domains rearranged methyltransferase 2 chr5:4715429-4718578 REVERSE LENGTH=626	6.0e-33	55%
RefSeq	Arabidopsis thaliana	NP_196966.2	DNA (cytosine-5)-methyltransferase DRM2 [Arabidopsis thaliana]	8.0e-33	55%
RefSeq	Populus trichocarpa	XP_002300046.1	DNA methyltransferase [Populus trichocarpa]	2.0e-37	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M548

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 17 aas, your sequence is shorter than subject: 110 - 626

Fln protein: S*P*LSLIFSGLGVAVVALYRIGINLKCVVAVETCRKNRFILRSWWRKTGQTGRLIEKEEVQHLTRDVLEELIDTVGGFDLVIGGSPCNNLSGNNRFTRDGLEGKHSAVF

Protein Length: 111

Fln nts: CGTCGTGACCTTAGCTGTCACTCATATTTTCTGGTCTTGGTGTTGCTGTGGTTGCTTTGTATCGTATTGGAATAAATTTAAAATGCGTTGTGGCCGTGGAAACATGTCGAAAGAACAGGTTTATTCTTAGGAGTTGGTGGAGGAAAACAGGCCAAACTGGTAGACTGATCGAGAAGGAAGAGGTTCAACATTTGACCAGAGATGTACTGGAGGAGCTAATAGATACAGTAGGAGGTTTTGATCTTGTCATCGGTGGAAGCCCATGTAATAACCTATCTGGTAACAACAGATTTACCAGAGATGGACTAGAAGGGAAACATTCCGCTGTTTTC

Fln Alignment:

AllPine_a_c52783___IFSGLGVAVVALYRIGINLKCVVAVETCRKNRFILRSWWRKTGQTGRLIEKEEVQHLTRDVLEELIDTVGGFDLVIGGSPCNNLSGNNRFTRDGLEGKHSAVF
Q9M548________________LFTGIGGGEVALHRLQIKMKLVVSVEISKVNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNRVSRVGLEGDQSSLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain