SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene116890

Length: 413 nt

UniGene Fasta

>sp_v3.0_unigene116890
GCTCAGATACAGCAAAAAACTCTTCTTCTTCTTGCACGGTGGGCTCATTATACTGGTCAGAAGCAAAAGGAGATGTCATTAGTCTTTATGTCCGAGTTAGGGAACTCCTACCAAAGTGGGAGAAATCATTTTTTTTATGGCAAAGTATCACGACGACCTTGTTGCTGATGTTAGGAAAAGACAGGAAGAAGGCCTAGAAGGTAAAATGCAGGCTGATGAGAAGCCTTGGTGGTCCTCTCTTCCAGATGTCCTATTGTTCTATGCAAAAGGTTTACACAGGGGTCAAAGTCGGCTTTATCAGGCTTTGCCACGCTTACTGACATTGTGGTTTCAATTTTGGTAGCATGTACATTGAAAGCTCCTCCCTCAGTGGTGATCTGAAGAATGCGCATAACAAAGTAATGGGCATTATG

Ace file of the UniGene sp_v3.0_unigene116890

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Serine/threonine-protein kinase ATR dbj\|BAD61693.1\| putative AtRAD3 [Oryza sativa Japonica Group] dbj\|BAD62537.1\| putative AtRAD3 [Oryza sativa Japonica Group]	-	-	2.0e-19	49%
FL-Next	sp=Serine/threonine-protein kinase ATR; Oryza sativa subsp. japonica (Rice).	-	-	0.0	82%

Source	Gene names
Sma3	PHYPADRAFT_129584; RCOM_0975960;

Source	GOs	Term	Type	e value	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	0.0	-
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	PIK-related kinase, FAT	IPR003151	-	-
Sma3	PIK-related kinase, FATC	IPR003152	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	UME	IPR012993	-	-
Sma3	PIK-related kinase	IPR014009	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G40820.1	ATRAD3, ATR, ATATR Ataxia telangiectasia-mutated and RAD3-related chr5:16343860-16353847 REVERSE LENGTH=2702	7.0e-16	45%
RefSeq	Arabidopsis thaliana	NP_198898.2	serine/threonine-protein kinase ATR [Arabidopsis thaliana]	9.0e-16	45%
RefSeq	Populus trichocarpa	XP_002305538.1	predicted protein [Populus trichocarpa]	8.0e-25	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5Z987

Fln msg: Separated hits, possible frame ERROR between 66 and 131, Unexpected STOP codon at 3' end. Distance to subject end: 513 aas, your sequence is shorter than subject: 115 - 2710

Fln protein: AQIQQKTLLLLARWAHYTGQKxxxxxxxxxxxxxxxxxxxxxxxFFMAKYHDDLVADVRKRQEEGLEGKMQADEKPWWSSLPDVLLFYAKGLHRGQSRLYQALPRLLTLWFQFW*

Protein Length: 116

Fln nts: GCTCAGATACAGCAAAAAACTCTTCTTCTTCTTGCACGGTGGGCTCATTATACTGGTCAGAAGCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTTTTTATGGCAAAGTATCACGACGACCTTGTTGCTGATGTTAGGAAAAGACAGGAAGAAGGCCTAGAAGGTAAAATGCAGGCTGATGAGAAGCCTTGGTGGTCCTCTCTTCCAGATGTCCTATTGTTCTATGCAAAAGGTTTACACAGGGGTCAAAGTCGGCTTTATCAGGCTTTGCCACGCTTACTGACATTGTGGTTTCAATTTTGGTAGCATGTACATTGAAAGCTCCTCCCTCAGTGGTGATCTGAAGAATGCGCATAACAAAGTAATGGGCATTATG

Fln Alignment:

AllPine_a_c51845___KTLLLLARWAHYTGQKQxxxxxxxxxxxxxxxxxxxxxxFFMAKYHDDLVADVRKRQEE------------GLEGKMQA--DEKPWWSSLPDVLLFYAKGLHRGQSRLYQALPRLLTLWFQF
Q5Z987________________KTLLLYTRWIHYTGQKQxxxxxxxxxxxxxxxxxxxxxxFCIAKFYDDLLVDARRRQEDKKIASGVGPVPPSSTGSLTTATEEKPWWDMLPVVLIQYARGLHRGHKNLFQALPRLLTLWFEF

SSRs (tot: 1)

Start position	End position	Sequence	Length
21	33	TCT TCT TCT TCT T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain