SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene116824

Length: 364 nt

UniGene Fasta

>sp_v3.0_unigene116824
CGATATCTTGCACAAATGCCTGTTGTTGTTCCGTTGGCTGTTGCTCATATTTGGTTGCATATTGAAGTGTCTTAATCCTATTCTGATGATTGCTGCCGCTCTAAGTGGTCGCTCTCCTTTTTTATCTCCATTAGATAAGCGTGAAGAAGCCAATGCCGCACGCCTTAATTTTGCAGGCAGTAGTAAGAGTGATCATATGGCCATTGTTTCTGCTTATGAGGGATGGATTGTTGCCCGACAAGATGGTTGGAAAGCAGAAGTTGAATATTGTAATGAAAATTTTCTGTCAAGGGAATCTCTTGTTCAAATGGAAGCCAGCCAAACTGATTACCTGAAAATGCTTGCAGATACAGGTTTCTGTTCG

Ace file of the UniGene sp_v3.0_unigene116824

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: putative ATP-dependent RNA helicase DHX57 [Danio rerio]	-	-	5.0e-21	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%

Source	Gene names
Sma3	MICPUN_63531; PHYPADRAFT_175128;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G35920.1	RNA helicase family protein chr2:15075674-15080506 FORWARD LENGTH=995	2.0e-23	47%
RefSeq	Arabidopsis thaliana	NP_850255.1	helicase associated domain-containing protein [Arabidopsis thaliana]	2.0e-23	47%
RefSeq	Populus trichocarpa	XP_002322777.1	predicted protein [Populus trichocarpa]	4.0e-23	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADJ5

Fln msg: Distance to subject end: 163 aas, your sequence is shorter than subject: 121 - 348

Fln protein: DILHKCLLLFRWLLLIFGCILKCLNPILMIAAALSGRSPFLSPLDKREEANAARLNFAGSSKSDHMAIVSAYEGWIVARQDGWKAEVEYCNENFLSRESLVQMEASQTDYLKMLADTGFCS

Protein Length: 122

Fln nts: CGATATCTTGCACAAATGCCTGTTGTTGTTCCGTTGGCTGTTGCTCATATTTGGTTGCATATTGAAGTGTCTTAATCCTATTCTGATGATTGCTGCCGCTCTAAGTGGTCGCTCTCCTTTTTTATCTCCATTAGATAAGCGTGAAGAAGCCAATGCCGCACGCCTTAATTTTGCAGGCAGTAGTAAGAGTGATCATATGGCCATTGTTTCTGCTTATGAGGGATGGATTGTTGCCCGACAAGATGGTTGGAAAGCAGAAGTTGAATATTGTAATGAAAATTTTCTGTCAAGGGAATCTCTTGTTCAAATGGAAGCCAGCCAAACTGATTACCTGAAAATGCTTGCAGATACAGGTTTCTGTTCG

Fln Alignment:

AllPine_a_c51763___IFGCILKCLNPILMIAAALSGRSPFLSPLDKREEANAARLNFAGSSKSDHMAIVSAYEGWIVARQDGWKAEVEYCNENFLSRESL---VQMEASQTDYLKM
D5ADJ5________________LIGEQLGCVNEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFF-VPESDHLTLLNVYQQWKSNQYRG-----DWCNDHFLQVKGLRKAREVRSQLLDILKM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain