SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene116664

Length: 334 nt

UniGene Fasta

>sp_v3.0_unigene116664
TGCAATACAAGGTGCAAGAACGTTAAAGCTCGCCCGGAGCGGTGCTGGAAGTACTGTAATCTTTGTTGTAATAAATGTAACGGTTGTGTTCCCAGCGGGCAATATGGCAACAAGGACGAATGCCCCTGCTACAGAGATATGAAGTCCGCAGCCGGCAAGCCCAAGTGTCCTTGATCTCAGCACTGGAGACTGGTCATTCACTTGTTCTAGGTTTTCTTGTTTTTTCCTTCTCTAGACCGGAGGGCTGCTACTGGTGTGTGTTAGGAAAAGTAGCAGTGATAATAAGAACAGCATTGAGCTTCTGGCATTTTTAGGTGAAGTATCCGCCATTTGG

Ace file of the UniGene sp_v3.0_unigene116664

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Contains similarity to gibberellin-stimulated transcript 1 like protein n=3 Tax=Arabidopsis RepID=Q8LFM2_ARATH	-	-	3.0e-19	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	GAST1 protein, putative	-	-	1.103e-13	-

Source	Gene names
Sma3	At2g39540; At5g59845; At5g59845/MMN10.7; GSVIVT00007725001; GSVIVT00019618001; LOC_Os03g14550; MtrDRAFT_AC158501g15v2; OsI_10763; OsJ_10147; POPTRDRAFT_549969; POPTRDRAFT_592034; POPTRDRAFT_649651; POPTRDRAFT_838545; RCOM_0810460; RCOM_1155080; RCOM_15882

Source	InterPros	Term	Type	e value	Identity
Sma3	Anaphylatoxin/fibulin	IPR000020	-	0.0	-
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G59845.1	Gibberellin-regulated family protein chr5:24111443-24111808 FORWARD LENGTH=89	5.0e-27	68%
RefSeq	Arabidopsis thaliana	NP_568914.1	gibberellin-regulated protein [Arabidopsis thaliana]	7.0e-27	68%
RefSeq	Populus trichocarpa	XP_002300251.1	predicted protein [Populus trichocarpa]	2.0e-23	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NL60

Fln msg: your sequence is shorter than subject: 58 - 117

Fln protein: CNTRCKNVKARPERCWKYCNLCCNKCNGCVPSGQYGNKDECPCYRDMKSAAGKPKCP*

Protein Length: 59

Fln nts: TGCAATACAAGGTGCAAGAACGTTAAAGCTCGCCCGGAGCGGTGCTGGAAGTACTGTAATCTTTGTTGTAATAAATGTAACGGTTGTGTTCCCAGCGGGCAATATGGCAACAAGGACGAATGCCCCTGCTACAGAGATATGAAGTCCGCAGCCGGCAAGCCCAAGTGTCCTTGA___TCTCAGCACTGGAGACTGGTCATTCACTTGTTCTAGGTTTTCTTGTTTTTTCCTTCTCTAGACCGGAGGGCTGCTACTGGTGTGTGTTAGGAAAAGTAGCAGTGATAATAAGAACAGCATTGAGCTTCTGGCATTTTTAGGTGAAGTATCCGCCATTTGG

Fln Alignment:

AllPine_a_c51593___CNTRCKNVKARPERCWKYCNLCCNKCNGCVPSGQYGNKDECPCYRDMKSAAGKPKCP
A9NL60________________CDRRCK-VAPRQKACLKFCGICCNACK-CVPSGTRGNKDECPCYRDKRSSQGKPKCP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain