SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene116394

Length: 242 nt

UniGene Fasta

>sp_v3.0_unigene116394
CTCGTCTGTTACCTCCGATTGGGAATCCGTGGGGTGGCCTTAGCGGCTGCGTGGACAGATTTTAACCTCGTGCTTGCTCTTTTTGGCCTACCTGTGCTATAATTCCAGCATCCATAGCAGATGCTGGGGAGGTTGGTCTACAGAGTGCTTCAAGGAATGGAGATCCCTTCTCACCTTGGCCATTCCTAGCTGTGTATCTGTCTGCTTAGAATGGTGGTGGTATGAATTAATGATCATTTTCT

Ace file of the UniGene sp_v3.0_unigene116394

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Multidrug resistance pump, putative n=1 Tax=Ricinus communis RepID=B9R9G6_RICCO	-	-	6.0e-21	71%
FL-Next	tr=Multidrug resistance pump, putative; Ricinus communis (Castor bean).	-	-	0.0	62%
Sma3	Multidrug resistance pump, putative	-	-	1.494e-07	-

Source	Gene names
Sma3	AT4g23030; At4g23030; F7H19.220; GSVIVT00019479001; POPTRDRAFT_415017; POPTRDRAFT_423178; POPTRDRAFT_903196; RCOM_1407430; RCOM_1497400;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G23030.1	MATE efflux family protein chr4:12072857-12074365 FORWARD LENGTH=502	2.0e-20	62%
RefSeq	Arabidopsis thaliana	NP_194034.1	mate efflux domain-containing protein [Arabidopsis thaliana]	2.0e-20	62%
RefSeq	Populus trichocarpa	XP_002318258.1	predicted protein, partial [Populus trichocarpa]	7.0e-23	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9R9G6

Fln msg: Separated hits, possible frame ERROR between 81 and 104, Distance to subject end: 232 aas, your sequence is shorter than subject: 81 - 553

Fln protein: LVCYLRLGIRGVALAAAWTDFNLVLAxxxxxxxxxSSIHSRCWGGWSTECFKEWRSLLTLAIPSCVSVCLEWWWYELMIIF

Protein Length: 82

Fln nts: CTCGTCTGTTACCTCCGATTGGGAATCCGTGGGGTGGCCTTAGCGGCTGCGTGGACAGATTTTAACCTCGTGCTTGCTCTxxxxxxxxxxxxxxxxxxxxxxxxTTCCAGCATCCATAGCAGATGCTGGGGAGGTTGGTCTACAGAGTGCTTCAAGGAATGGAGATCCCTTCTCACCTTGGCCATTCCTAGCTGTGTATCTGTCTGCTTAGAATGGTGGTGGTATGAATTAATGATCATTTTCT

Fln Alignment:

AllPine_a_c51261___LVCYLRLGIRGVALAAAWTDFNLVLALxxxxxxxxSSIHSRCWGGWSTECFKEWRSLLTLAIPSCVSVCLEWWWYELMII
B9R9G6________________LVTHLNLGIKGVALSGVWTNFNLVASLxxxxxxxxSGVHKRTWGGLSMECFKEWKALLNLAIPSCISVCLEWWWYEIMTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain