SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene116340

Length: 287 nt

UniGene Fasta

>sp_v3.0_unigene116340
CGTCGTGACCTTGGCTGTCACTCATTCTTTGTAGTGGGAATGGAGGGTGGTACATGGACACCTGCAAGTAGGTCTGGATACAATCTCTTCGATGCAGTTTCTCGTTGTACAACTCAGGTGTATCCACAGTCATGGACTGCTTTTCTTTTAACTTTGATAACGCAGGAATATGGAACTTGAGGTCAGAAATATGGCCACGCCAATATCTTGGTCAGCAAACATACGTGAGAGTCAGGTCTCCTGTGCGATCACTGAGAGATGAACTTAATATTCCTCGCAATGCTCTC

Ace file of the UniGene sp_v3.0_unigene116340

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	copper ion binding / oxidoreductase (EC:1.10.3.3)	-	-	2.0e-25	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Multicopper oxidase, putative	-	-	7.842e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	L-ascorbate oxidase.	EC:1.10.3.3	-	6.213e-10	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		6.213e-10	%
Sma3	Metabolic pathways	01100		6.213e-10	%

Source	Gene names
Sma3	AT1G41830; AT4g22010; At1g41830; At1g55560; At1g55560/T5A14_2; At1g55570; At1g76160; At3g13390; At3g13400; At4g22010; B1148D12.11; Bp10; Bplo; F5A13.5; GSVIVT00010974001; GSVIVT00012092001; GSVIVT00015539001; GSVIVT00024867001; GSVIVT00025890001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G13400.1	sks13 SKU5 similar 13 chr3:4355257-4357305 FORWARD LENGTH=551	3.0e-26	72%
RefSeq	Arabidopsis thaliana	NP_187948.1	protein SKU5-like 13 [Arabidopsis thaliana]	3.0e-26	72%
RefSeq	Populus trichocarpa	XP_002303974.1	predicted protein [Populus trichocarpa]	1.0e-27	68%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWT1

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 156 and 156, STOP codon was not found. Distance to subject end: 12 aas, your sequence is shorter than subject: 96 - 539

Fln protein: RRDLGCHSFFVVGMEGGTWTPASRSGYNLFDAVSRCTTQVYPQSWTAFLLTxxNAGIWNLRSEIWPRQYLGQQTYVRVRSPVRSLRDELNIPRNAL

Protein Length: 97

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTTGTAGTGGGAATGGAGGGTGGTACATGGACACCTGCAAGTAGGTCTGGATACAATCTCTTCGATGCAGTTTCTCGTTGTACAACTCAGGTGTATCCACAGTCATGGACTGCTTTTCTTTTAACTxxxxxxAACGCAGGAATATGGAACTTGAGGTCAGAAATATGGCCACGCCAATATCTTGGTCAGCAAACATACGTGAGAGTCAGGTCTCCTGTGCGATCACTGAGAGATGAACTTAATATTCCTCGCAATGCTCTC

Fln Alignment:

AllPine_a_c51198___HSFFVVGMEGGTWTPASRSGYNLFDAVSRCTTQVYPQSWTAFLLTLDNAGIWNLRSEIWPRQYLGQQTYVRVRSPVRSLRDELNIPRNAL
A9NWT1________________YSFFVAGMDGGQWSPASRKGYNLFDAVSRSTTQVYPNSWTAVLLMLDNAGMWNVRSEIWARQYLGQQFYMKVAG--FAGQDEYIVPRNAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain