SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene116294

Length: 315 nt

UniGene Fasta

>sp_v3.0_unigene116294
CGTCGTGACCTTGGCTGTCACTCAATTTTCAAGACGAGCTTAGTGGGAAGGCCAGTGGTGGTGTCCACCGACCCAGACGTGAATCAGCTAGTATTCCAACAGGAGGGTCGCCTGTTTCAAAGTTGGTACCCCGACACCTTCACAAAAGTATTTGGGGAACAAAATGTTGGATCAATCCACGGTCATCTCTACAAGTATCTTCGCAATATGGTTTTGACATTGGTGGGTCCTGAGAATCTCAAAGAAAGCTTCTGCCTGAAGTGGAGCTCAATCTGCTCGCCAAGACCCGCGATTGGCACGACCGTGTTGTCGACA

Ace file of the UniGene sp_v3.0_unigene116294

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9RC34_RICCO	-	-	1.0e-28	75%
FL-Next	tr=Cytochrome P450 90A20; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%

Source	Gene names
Sma3	At1g12740; CYP87A3; CYP87A7; CYP87A8; GSVIVT00001130001; LOC_Os04g48170; OSIGBa0111L12.2; OSIGBa0111L12.4; OSIGBa0111L12.5; OSIGBa0139P06.11; OSJNBa0088I22.12; OSJNBa0088I22.13; OSJNBa0088I22.16; Os04g0570000; Os04g0570500; Os04g0570600; OsI_08447; OsI_17

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	cytoplasmic vesicle membrane	GO:0030659	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Nucleoside diphosphate kinase	IPR001564	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G12740.2	-	7.0e-32	70%
RefSeq	Arabidopsis thaliana	NP_172734.2	cytochrome P450, family 87, subfamily A, polypeptide 2 [Arabidopsis thaliana]	9.0e-32	70%
RefSeq	Populus trichocarpa	XP_002299557.1	cytochrome P450 [Populus trichocarpa]	6.0e-36	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWM7

Fln msg: Distance to subject end: 312 aas, your sequence is shorter than subject: 105 - 487

Fln protein: RRDLGCHSIFKTSLVGRPVVVSTDPDVNQLVFQQEGRLFQSWYPDTFTKVFGEQNVGSIHGHLYKYLRNMVLTLVGPENLKESFCLKWSSICSPRPAIGTTVLST

Protein Length: 106

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTCAAGACGAGCTTAGTGGGAAGGCCAGTGGTGGTGTCCACCGACCCAGACGTGAATCAGCTAGTATTCCAACAGGAGGGTCGCCTGTTTCAAAGTTGGTACCCCGACACCTTCACAAAAGTATTTGGGGAACAAAATGTTGGATCAATCCACGGTCATCTCTACAAGTATCTTCGCAATATGGTTTTGACATTGGTGGGTCCTGAGAATCTCAAAGAAAGCTTCTGCCTGAAGTGGAGCTCAATCTGCTCGCCAAGACCCGCGATTGGCACGACCGTGTTGTCGACA

Fln Alignment:

AllPine_a_c51139___IFKTSLVGRPVVVSTDPDVNQLVFQQEGRLFQSWYPDTFTKVFGEQNVGSIHGHLYKYLRNMVLTLVGPENLKE
A9NWM7________________VFKTHLFGKPTIFSTDPEVNKFILQNEGKLFATSYPSSITNLLGKHSLLLIQGNLHKRLHSLTLSFANSSVLKD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain