SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene116171

Length: 316 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene116171
TGATTATACTGTAAGAGATTCAGATGGCTCAGTTATCCAATTTAATTATGGTGAAGATGGACTAGATGTCATGAAATTAGTTGCTTGACTGAATTCGAAGTTCTTGCGACTAATCAAAAGCTTGTTAGACAGAGGCTTGGTACAAATAAACTTGATGAACTGGGTTCTCAGCATTCCAAGAAAGAAAAATTCAAAGAGAAATCTTCAGTTGCAGGAAGCTATGCAAAAGACTTGCCAGAAGCTATTGAAAAAAAGGTACAGGAGTTCATTGGGGGTCTTTCAAAGGAAAAGAGACAATCTCTTAAATTGAAGAATC

Ace file of the UniGene sp_v3.0_unigene116171 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase (Fragment) n=1 Tax=Pinus nigra RepID=Q2TUP3_9CONI	-	-	2.0e-29	85%
FL-Next	sp=DNA-directed RNA polymerase; Selaginella moellendorffii (Spikemoss).	-	-	0.0	40%
Sma3	DNA-directed RNA polymerase	-	-	4.546e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA-directed RNA polymerase.	EC:2.7.7.6	-	1.395e-07	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	1.395e-07	%
Sma3	Pyrimidine metabolism	00240	1.395e-07	%
Sma3	Metabolic pathways	01100	1.395e-07	%

Source	Gene names
Sma3	rpa1;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3		GO:0006350	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase, alpha subunit	IPR000722	-	-
Sma3	RNA polymerase Rpb1, domain 3	IPR007066	-	-
Sma3	RNA polymerase Rpb1, domain 5	IPR007081	-	-
Sma3	RNA polymerase Rpb1, domain 4	IPR007083	-	-
Sma3	DNA-directed RNA pol I, largest subunit	IPR015699	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8SDS6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 487 aas, your sequence is shorter than subject: 105 - 1578

Fln protein: *LYCKRFRWLSYPI*LW*RWTRCHEISCLTEFEVLATNQKLVRQRLGTNKLDELGSQHSKKEKFKEKSSVAGSYAKDLPEAIEKKVQEFIGGLSKEKRQSLKLKN

Protein Length: 106

Fln nts: TGATTATACTGTAAGAGATTCAGATGGCTCAGTTATCCAATTTAATTATGGTGAAGATGGACTAGATGTCATGAAATTAGTTGCTTGACTGAATTCGAAGTTCTTGCGACTAATCAAAAGCTTGTTAGACAGAGGCTTGGTACAAATAAACTTGATGAACTGGGTTCTCAGCATTCCAAGAAAGAAAAATTCAAAGAGAAATCTTCAGTTGCAGGAAGCTATGCAAAAGACTTGCCAGAAGCTATTGAAAAAAAGGTACAGGAGTTCATTGGGGGTCTTTCAAAGGAAAAGAGACAATCTCTTAAATTGAAGAATC

Fln Alignment:

AllPine_a_c50988___SCLTEFEVLATNQKLVRQRLGTNKLDELGSQHXXXXXXXXXXSVAGSYAKDLPEAIEKKVQEFIGGLSKEKRQSLKL
D8SDS6________________SCLTNFDLMATNRDLITQKLGLG-------EHAKDVKNMKAIVSKDAYITDIPEAMEQKFEKFMGGLSEEKKKAYKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain