SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene116169

Length: 195 nt

UniGene Fasta

>sp_v3.0_unigene116169
TTCCGAGACCCGAATTGCCGATTTCTTTGATGTGGTAATTGGCACCGGCGTCGGCGGACTCATCGCCGCCATGCTTTTCGCCAGTGACGGCAGCGGCCGCCCGCTTTGCCGGGCGGAAGAAGTGTGGAGGCTGCTGGCGGAGGAGGGGCGCAGGATGTTCAAGCCAACGTCGGGAGGGATCTTGGCTAAATTCCG

Ace file of the UniGene sp_v3.0_unigene116169

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PATATIN-like protein 6 [Arabidopsis thaliana] gb\|AAC28986.1\| similar to latex allergen from Hevea brasiliensis [Arabidopsis thaliana] gb\|AAL32726.1\| putative patatin protein [Arabidopsis thaliana] gb\|AAN31902.1\| unknown protein [Arabidopsis thaliana] gb\|A	-	-	4.0e-10	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%

Source	Gene names
Sma3	PHYPADRAFT_115901; PHYPADRAFT_127239;

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity	GO:0016787	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Patatin/Phospholipase A2-related	IPR002641	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G39220.1	PLP6, PLA IIB PATATIN-like protein 6 chr2:16375055-16376663 REVERSE LENGTH=499	3.0e-14	50%
RefSeq	Arabidopsis thaliana	NP_181455.1	PATATIN-like protein 6 [Arabidopsis thaliana]	4.0e-14	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW42

Fln msg: Distance to subject end: 280 aas, your sequence is shorter than subject: 64 - 392

Fln protein: SETRIADFFDVVIGTGVGGLIAAMLFASDGSGRPLCRAEEVWRLLAEEGRRMFKPTSGGILAKF

Protein Length: 65

Fln nts: TTCCGAGACCCGAATTGCCGATTTCTTTGATGTGGTAATTGGCACCGGCGTCGGCGGACTCATCGCCGCCATGCTTTTCGCCAGTGACGGCAGCGGCCGCCCGCTTTGCCGGGCGGAAGAAGTGTGGAGGCTGCTGGCGGAGGAGGGGCGCAGGATGTTCAAGCCAACGTCGGGAGGGATCTTGGCTAAATTCCG

Fln Alignment:

AllPine_a_c50986___ETRIADFFDVVIGTGVGGLIAAMLFASDGSGRPLCRAEEVWRLLAEEGRRMFKPTSGGILAKF
A9NW42________________DVSIADYFDVIAGTSTGGLVTAMLAAPNENNRPLFAAKDITKFYLDNCPHIFPPTTGFLQSVF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain