SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene116157

Length: 180 nt

UniGene Fasta

>sp_v3.0_unigene116157
GAGATATTGAACTGCTCCAGACACCAAAATGGCGACCTGTTTCAGGCAGTGCTCGGCGGTTTAGGCCAGTTTGGCATCATAACGAAGGCCAGGATCGAACTCGAACCCGCACCACAGCGAGTGAGATGGATCAGAGTTTTGACTCAGACTTTGCAGCATTCACCAGGGATCAAGAATATC

Ace file of the UniGene sp_v3.0_unigene116157

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytokinin oxidase/dehydrogenase 6 [Arabidopsis thaliana] sp\|Q9LY71.2\|CKX6_ARATH RecName: Full=Cytokinin dehydrogenase 6; AltName: Full=Cytokinin oxidase 6; Short=AtCKX6; Short=AtCKX7; Short=CKO6; Flags: Precursor gb\|AEE80482.1\| cytokinin oxidase/dehydroge	-	-	6.0e-14	76%
FL-Next	sp=Cytokinin dehydrogenase 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	76%
Sma3	Cytokinin oxidase	-	-	2.64e-39	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cytokinin dehydrogenase.	EC:1.5.99.12	-	1.4013e-45	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Zeatin biosynthesis	00908		1.4013e-45	%

Source	Gene names
Sma3	At1g75450; At2g19500; At2g41510; At3g63440; At5g56970; B1131G07.3; B1131G07.5; B1150F11.25; BoCKX1; BrCKX1; CKX; CKX1; CKX10; CKX2; CKX3; CKX5; CKX6; CKX7; F1B16.2; F3P11.10; GSVIVT00013006001; GSVIVT00014541001; GSVIVT00016550001; GSVIVT00025661001; GSVI

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	primary amine oxidase activity	GO:0008131	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	cytokinin dehydrogenase activity	GO:0019139	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	cytokinin metabolic process	GO:0009690	Biological Process	-
Sma3	cytokinin catabolic process	GO:0009823	Biological Process	-
Sma3	meristem development	GO:0048507	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oxygen oxidoreductase covalent FAD-binding site	IPR006093	-	-
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-
Sma3	Cytokinin dehydrogenase 1, FAD/cytokinin binding domain	IPR015345	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-binding, type 2, subdomain 1	IPR016167	-	-
Sma3	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G63440.1	ATCKX6, CKX6, ATCKX7 cytokinin oxidase/dehydrogenase 6 chr3:23424291-23426265 FORWARD LENGTH=533	2.0e-18	76%
RefSeq	Arabidopsis thaliana	NP_191903.3	cytokinin oxidase/dehydrogenase 6 [Arabidopsis thaliana]	3.0e-18	76%
RefSeq	Populus trichocarpa	XP_002304773.1	cytokinin oxidase [Populus trichocarpa]	1.0e-18	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LY71

Fln msg: Distance to subject end: 262 aas, your sequence is shorter than subject: 60 - 533

Fln protein: EILNCSRHQNGDLFQAVLGGLGQFGIITKARIELEPAPQRVRWIRVLTQTLQHSPGIKNI

Protein Length: 61

Fln nts: GAGATATTGAACTGCTCCAGACACCAAAATGGCGACCTGTTTCAGGCAGTGCTCGGCGGTTTAGGCCAGTTTGGCATCATAACGAAGGCCAGGATCGAACTCGAACCCGCACCACAGCGAGTGAGATGGATCAGAGTTTTGACTCAGACTTTGCAGCATTCACCAGGGATCAAGAATATC

Fln Alignment:

AllPine_a_c50974___EILNCSRHQNGDLFQAVLGGLGQFGIITKARIELEPAPQRVRWIRVL
Q9LY71________________EILNCTKRQNSDLFNGVLGGLGQFGIITRARIALEPAPTMVKWIRVL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain